Biology, Medicine and Bioinformatics MCP servers & tools

Comprehensive PubMed MCP Server to search, retrieve, and analyze biomedical literature from NCBI.

Provides rich tools to search, retrieve, and analyze data from ClinicalTrials.gov API v2.

Your own SLATE health data in your AI assistant: read, trend, plan and log. Never suggests a dose.

An MCP server that provides access to medical information, drug databases, and healthcare resources. Enables AI assistants to query medical data, drug interactions, and clinical guidelines.

Unified MCP server for ICD-11 (WHO), LOINC, RxNorm, MeSH (NLM), ATC, CID-10 (Brazilian DataSUS), and optional SNOMED CT. 28 tools (34 with SNOMED) with structuredContent + outputSchema on every default tool. Hosted on Cloudflare Workers, listed on Smithery, and on npm.

MCP server to interact with the BioThings API, including genes, genetic variants, drugs, and taxonomic information.

Securely access and manage FHIR healthcare data stored in Medplum.

Connect your Oura Ring to Claude AI assistants. Health metrics with smart analysis tools.

Privacy-first Google Health API MCP server for health, sleep, activity and HR agents

FHIR MCP server with SMART Backend Services, response compaction, FHIRPath, and guarded writes.

HEOR (Health Economics and Outcomes Research) MCP server with 7 tools for literature search across 41 medical data sources (PubMed, NICE, CADTH, ICER, etc.), cost-effectiveness modeling (Markov/PartSA/PSA), and HTA dossier preparation for pharmaceutical and biotech teams.

MCP server for the SynergyAge database of synergistic and antagonistic genetic interactions in longevity.

Biomedical research server providing access to PubMed, ClinicalTrials.gov, and MyVariant.info.

PubMed literature search and US/UK drug labelling for AI assistants.

MCP server for Tebra/Kareo practice management — patients, billing, scheduling, FHIR (45 tools)

An MCP server that provides access to exported data from Apple Health. Data analytics included.

MCP to search and read medical / life sciences papers from PubMed.

Healthcare billing AI for agents: ICD-10/CPT/HCPCS code lookup (81,769 codes with RVU + OPPS pricing), prior auth prediction, medical NER, claims validation, denial-risk scoring, HIPAA compliance auditing, and NPI/drug enrichment. 20 tools, 10 free credits then pay-per-call via credits or anonymous USDC (x402). npx @mymedi-ai/mcp-server

Read-only Medplum chart search and patient context for MCP clients.

A DICOMweb MCP server that exposes a DICOMweb-compliant DICOM archive to AI assistants, enabling search of studies, series and instances, metadata inspection, structured report reading, encapsulated PDF text extraction, and frame rendering.

Model Context Protocol server for Fast Healthcare Interoperability Resources (FHIR) APIs. Provides seamless integration with FHIR servers, enabling AI assistants to search, retrieve, create, update, and analyze clinical healthcare data with SMART-on-FHIR authentication support.

Local-first continuous glucose monitor MCP server for Dexcom Developer API and FreeStyle Libre via LibreLink Up.

DICOM integration to query, read, and move medical images and reports from PACS and other DICOM compliant systems.

Taiwan's first public MCP server for National Health Insurance (NHI) data — 234 rejection codes, 1,497 ICD-10→procedure mappings across 20 specialties, audit indicators (008/014/027/P043), and semantic wiki search over 8,232 chunks of official NHI documentation. Powered by OPDSTAR. Install: npx @opdstar/nhi-mcp.

MCP Server that connects AI agents to FHIR servers. One example use case is querying patient history in natural language.

ClinicalTrials MCP — wraps ClinicalTrials.gov API v2 (free, no auth)

FDA medical-device regulatory intelligence from keyless openFDA datasets.

Analyze biomarker panels with an MD-led clinical engine. Guideline-cited. Synthetic data only.

GLOBOCAN — the IARC/WHO Global Cancer Observatory.

Human Phenotype Ontology — clinical phenotype terms + gene/disease annotations

MedlinePlus MCP — NIH consumer health info

Europe PubMed Central — biomedical literature search and full text

EMA Medicines MCP — the European Medicines Agency's public medicines register.

Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants

WHO Global Tuberculosis Programme — the TME data collection.

MyHealthfinder MCP — U.S. preventive-services & health-screening guidance

OpenFDA MCP — wraps the openFDA API (free, no auth required)

EBI Ontology Lookup Service — 250+ biomedical ontologies

Medicare coverage policy from CMS: national and local coverage determinations, plus open analyses

MCP server for spatial transcriptomics analysis with 60+ integrated methods covering cell annotation, deconvolution, spatial statistics, and visualization.

Evidence-based supplement guidance: clinical doses, form comparisons, interactions, cost-per-dose.

EMA Article 57 product data — every medicine with a valid marketing

BioPortal — NCBO's biomedical ontology repository (data.bioontology.org).

Evidence-based supplement research, dosing, safety, and interactions as agent-callable tools.

MCP server for Withings health data — sleep, activity, heart, and body metrics.

Map clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability.

MCP server providing a powerful bioinformatics toolkit for genomics queries and analysis, wrapping the popular gget library.

Connects to Epic MyChart patient portals: interactive login, list and download your own test results

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments.

MCP server for a queryable database for aging and longevity research from the OpenGenes project.

Open Targets MCP server for targets, diseases, drugs, variants, and evidence

MCP server for InBody body-composition data — scans, body fat, muscle mass, body water

Comprehensive NCBI/PubMed literature search server with advanced analytics, caching, MeSH integration, related articles discovery, and batch processing for all life sciences and biomedical research.

MCP server for accessing personal health and biometric data including sleep stages, heart rate, HRV, glucose, workouts, calendar, and location via the Fulcra Life API with OAuth2 consent.

Pre-clinical drug discovery intelligence — targets, compounds, patents, trials, whitespace

Apple Health AI Bridge provides read-only local MCP access for Health Bridge for AI.

32 tools for plant-genomics locus lookup across 11 public backends (Ensembl Plants, Phytozome, UniProtKB, KEGG, STRING-DB, Gramene, Europe PMC, QuickGO, NCBI BLAST, ATTED-II, BAR). Single-locus, parallel-batch, and cross-source synthesis variants; JSON output schemas and EDAM ontology tags on every tool. pipx install plant-genomics-mcp.

MCP server to interact with the UCSC Genome Browser API, letting you find genomes, chromosomes, and more.

Multi-source academic + code + medical-regulatory trend monitoring (arXiv, PubMed, GitHub, Hugging Face, openFDA 510(k)/Recalls). Newspaper-style briefings, per-domain tuning, sandbox-safe Python launcher.

The only MCP server bridging DICOM, HL7v2, and FHIR in one package. Cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding (GE, Siemens, Philips), and integration pattern knowledge. Built by a 19-year healthcare IT veteran. pip install dicom-hl7-mcp