Biology & Bioinformatics MCP Servers

Model Context Protocol servers in the Biology & Bioinformatics category.

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Molecare MCP

Educational dermatology knowledge and lesion tooling. No credentials needed. Not a medical device.

Medplum MCP

Securely access and manage FHIR healthcare data stored in Medplum.

Spiderbrain

Deterministic context layer for your codebase: change impact, blast radius, answers with receipts.

HealthChain

Typed, validated FHIR tools for healthcare AI agents — build, read, validate, and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation reports built for fix-and-retry. pip install healthchain[mcp]

Phi Longevity Prism

Analyze biomarker panels with an MD-led clinical engine. Guideline-cited. Synthetic data only.

Fhirfly MCP Server

Healthcare reference data: drugs, providers, diagnoses, labs, vaccines, and claims via 28 tools.

Omophub MCP

Search, lookup, map, and navigate OMOP medical vocabularies via AI agents

Dingdawg Healthcare Agent

HIPAA-aware healthcare AI. Clinical documentation, compliance checks, audit prep. Free local tier.

Wcagc MCP

WCAG-Compliance

Deterministic axe-core accessibility scanning (WCAG 2.1 AA, EN 301 549, PDF/UA) through a wcagc account: scan any public URL or PDF, crawl a whole registered site, replay saved multi-step journeys, and read violation trends. Returns structured findings — rule, severity counts and the success criteria involved — so the assistant reasons over real results rather than guessing from markup. Every scan result carries an automated-coverage disclaimer instead of a score or a pass/fail verdict. Hosted at https://mcp.wcagc.com/mcp, or run it locally with npx -y @wcagc/mcp.

Supplement Advisor MCP

Evidence-based supplement guidance: clinical doses, form comparisons, interactions, cost-per-dose.

Prism

Local-first repo intelligence for agents: DNA, health, blast radius, and Dispatch jobs.

Rosetta MCP Server

Rosetta/PyRosetta protein modeling and Biotite translation for computational biology

Repo Graph

Structural graph map of any codebase for AI coding assistants. Scans entities, relationships, and feature flows across 13 languages so LLMs navigate by structure instead of grepping through everything.

Causely

Causal reasoning for reliability: root cause, blast radius, and service health for agents.

Noodle Biomedical Literature Discovery MCP

Official public, read-only Model Context Protocol server from Helena Bioinformatics for biomedical literature discovery. Agents can search PubMed and scholarly research, resolve PMID, DOI, and PMCID identifiers, inspect publication metadata, find related papers, traverse bounded citation graphs, explore semantic literature neighborhoods, and check corpus coverage. Use the hosted Streamable HTTP endpoint https://api.helena.bio/noodle/v1/mcp; no npm or npx package is required.

Folklore Clinical Variant Interpretation MCP

Folklore MCP 1.5.0 is Helena Bioinformatics’ public, read-only bioinformatics MCP for genomic variant interpretation, ClinGen gene-disease evidence and literature. Seven tools include get_gene_disease_associations (gene symbol/HGNC ID to diseases) and search_disease_genes (MONDO ID/disease name to genes), preserving inheritance, source classifications and provenance. Existing GRCh38 germline variant and literature tools remain available, alongside the optional support_helena helper. Streamable HTTP; no account or API key. No patient data, raw DNA/VCF ingestion or batch processing. Results require professional review and are not diagnoses.

Medical Codes MCP Server

Offline US medical code lookup and crosswalk — ICD-10-CM, ICD-10-PCS, HCPCS Level II. Keyless.

Npi Providers MCP Server

Look up US healthcare providers in the NPPES NPI registry and resolve NUCC specialty codes.

Service Public France

French public services: tax, property, admin, education, healthcare, security, risks, legal texts

Appendix

Physician-reviewed medical opinions and prescriptions for AI agents.

Convergent Provider Directory

Search a healthcare provider directory and get full provider details by id.

API Governance

API governance for AI agents. Detects breaking changes, scores blast radius, blocks unsafe calls.

Chembl MCP Server

Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.

MCP Code Indexer

Nishant-Chaudhary5338

Index any TypeScript/React repo (including monorepos) into a queryable code graph. Reverse queries (who-renders, who-calls, find-references), blast-radius analysis, dependency cycles, dead-code orphans, and symbol signatures — exposed over stdio. Install: npx code-graph-indexer.

Hormonaly Clinical Intelligence

24 tools for evidence-graded clinical queries, hormones, peptides, longevity & drug interactions.

Fda Samd MCP

FDA AI/ML Software as a Medical Device Action Plan + 510(k) + PMA + De Novo pathways for US MedT...

Causely

Causal reasoning for reliability: root cause, blast radius, and service health for agents.

EasyDocForms

Healthcare intake for agents: import blank PDFs, create patient fill links, fetch completed PDFs.

Symvanta

Hosted code graph over MCP: exact callers, dependencies, and cross-repo blast radius for AI agents.

MCP Blast Radius

MCP Blast-Radius Auditor — static blast radius extraction and AOS manifest.json divergence gate (Oracle / Permitted / Prohibited). Stdio MCP (mcp-blast-radius) plus CI blocking gate (mcp-blast-radius-gate). Install: pip install mcp-blast-radius==0.2.0 · PyPI