Skip to main content
AllMCPs
BrowseBestCategoriesStackCompareToolsGuidesBlog
Log in Submit MCP

Stay in the loop

Get new MCP servers and top picks in your inbox.

AllMCPs

The open directory for discovering and installing Model Context Protocol servers.

Launched onTiny Startupstinystartups.com
Explore
  • Browse servers
  • Best MCP servers
  • Categories
  • MCP clients
  • Agent prompts
  • Stack Builder
  • Compare servers
  • Random discovery New
  • Submit a server
  • Pricing & Boost Boost
Learn
  • Guides hub
  • What is MCP?
  • Install guide
  • Build an MCP server
  • Deploy an MCP server
  • Security guide
  • Troubleshooting
  • MCP for SEO & AEO
  • Protocol versioning
  • Blog & updates
Tools
  • All developer tools
  • Config generator
  • Config validator
  • Config auditor
  • MCP playground
  • Token calculator
  • OpenAPI β†’ MCP
  • Badge generator
For agents
  • REST API docs
  • Trust & traffic Live
  • Remote MCP server SSE β†— (opens in a new tab)
  • llms.txt β†— (opens in a new tab)
  • Catalog JSON β†— (opens in a new tab)
Company
  • About
  • Advertise Sponsor
  • Contact
  • X (@AllMCPs) β†— (opens in a new tab)
  • GitHub β†— (opens in a new tab)
  • Terms
  • Privacy
AllMCPs VerifiedAllMCPs VerifiedFeatured on Nick LaunchesFeatured on Nick LaunchesLaunch Llama NewsletterLaunch Llama NewsletterVerified DR - allmcps.comVerified DR - allmcps.comFeatured on SaaSGrowFeatured on SaaSGrowFeatured on Twelve ToolsFeatured on Twelve ToolsFeatured on Saaspa.geFeatured on Saaspa.geFeatured on Findly.toolsFeatured on Findly.toolsFeatured on Startup FameFeatured on Startup FameFeatured on LaunchKiwiFeatured on LaunchKiwiFeatured on ScrollLaunchFeatured on ScrollLaunchFeatured on DailyPingsFeatured on DailyPingsFazier badgeFazier badgeFeatured on NewTool.siteFeatured on NewTool.siteFeatured on saasfame.comFeatured on saasfame.comDR Checker - Domain RatingDR Checker - Domain RatingListed on Turbo0Listed on Turbo0Launched on LaunchBoard - Product Launch PlatformLaunched on LaunchBoard - Product Launch PlatformList on SimilarlabsList on Similarlabshttps://codetrendy.comhttps://codetrendy.comListed on DevTool.ioFeatured on BuildlistFeatured on BuildlistLaunched on Tiny StartupsFeatured on ShowMeBestAIFeatured on ShowMeBestAIFind us on LaunchZoneFind us on LaunchZoneAllMCPs VerifiedAllMCPs VerifiedFeatured on Nick LaunchesFeatured on Nick LaunchesLaunch Llama NewsletterLaunch Llama NewsletterVerified DR - allmcps.comVerified DR - allmcps.comFeatured on SaaSGrowFeatured on SaaSGrowFeatured on Twelve ToolsFeatured on Twelve ToolsFeatured on Saaspa.geFeatured on Saaspa.geFeatured on Findly.toolsFeatured on Findly.toolsFeatured on Startup FameFeatured on Startup FameFeatured on LaunchKiwiFeatured on LaunchKiwiFeatured on ScrollLaunchFeatured on ScrollLaunchFeatured on DailyPingsFeatured on DailyPingsFazier badgeFazier badgeFeatured on NewTool.siteFeatured on NewTool.siteFeatured on saasfame.comFeatured on saasfame.comDR Checker - Domain RatingDR Checker - Domain RatingListed on Turbo0Listed on Turbo0Launched on LaunchBoard - Product Launch PlatformLaunched on LaunchBoard - Product Launch PlatformList on SimilarlabsList on Similarlabshttps://codetrendy.comhttps://codetrendy.comListed on DevTool.ioFeatured on BuildlistFeatured on BuildlistLaunched on Tiny StartupsFeatured on ShowMeBestAIFeatured on ShowMeBestAIFind us on LaunchZoneFind us on LaunchZone
Β© 2026 Jackalope Digital LLC. All rights reserved.
  1. Home
  2. Biology & Bioinformatics
  3. Spiderbrain
Spiderbrain logo
Health: ActiveRecent health check succeeded.Last checked 8/26/2026, 10:47:33 PM

Spiderbrain

User RatingsBe the first to rate and review this MCP server! Enrichment pendingWe haven’t run our AI enrichment pass on this listing yet, so the overview, use cases, and FAQ below may be sparse or missing. We work through the catalog over time β€” check back soon.
View Repository3 GitHub StarsTotal stargazers on GitHub for the source repository (3 stars).Visit Website

Deterministic context layer for your codebase: change impact, blast radius, answers with receipts.

Quick Install

Automated & IDE Setup

Copy the AI prompt to install this server into Claude Code, Cursor, or another agent β€” or use 1-click editor setup below.

Add to CursorAdd to VS Code
Not yet automatically verified

We haven't yet run this listing's install command through our automated sandbox check. This isn't a red flag β€” we're steadily working through the catalog.

Manual Client & Custom JSON ConfigExpand JSON β–Ύ

Client Config & Setup

Choose your client or environment
Target File:~/Library/Application Support/Claude/claude_desktop_config.json
claude_desktop_config.json
{
  "mcpServers": {
    "spiderbrain": {
      "command": "npx",
      "args": [
        "-y",
        "spiderbrain"
      ]
    }
  }
}

πŸ’‘ Paste the JSON block into your client's configuration file under mcpServers, then restart the application.

Install Directory Badge Claim listing Alternatives🧬 More in Biology & Bioinformatics

Documentation Overview

SpiderBrain: the understanding layer for your repo

conformance

A repo tells an AI agent what the code is. It never tells it what matters, what a change reaches, or why anything was built the way it was. So every agent re-derives the structure from scratch, every session, and gets it a little wrong.

SpiderBrain gives a repo a committed, source-free understanding layer: a deterministic map of its structure, dependencies, and blast radius that any AI coding agent can read with zero setup. This repository is the open, MIT-licensed part of that layer: the reader, and the format specification.

  • Website: https://spiderbrain.ai
  • Determinism benchmark: https://contextbenchmark.com

Use it in one line

When a repo carries a .spiderbrain/ folder, point the reader at it:

Terminal
npx spiderbrain mcp --root .

An MCP client's working directory is usually not your repository, so pass the repo explicitly with --root <path>, --root=<path>, or the SPIDERBRAIN_ROOT environment variable. Without it the server serves the working directory and reports that no understanding layer was found, which is a wrong answer rather than an error.

That starts an MCP server your coding agent (Claude Code, Cursor, or any MCP client) can query. Tools: sb_blast, sb_impact, sb_path, sb_keystones, sb_map, sb_ask. No account, no SpiderBrain install, no configuration. A real session transcript is in examples/agent-session.md.

Prefer the terminal:

Terminal
npx spiderbrain blast src/server/health.ts   # what a change here reaches
npx spiderbrain impact                        # what YOUR CURRENT DIFF reaches
npx spiderbrain keystones                     # the load-bearing files
npx spiderbrain map src/auth/session.ts       # what a file is + touches
npx spiderbrain path src/a.ts src/b.ts        # how one file reaches another
npx spiderbrain verify --allow-stale          # folder untampered? see note below

Why --allow-stale on a committed brain. verify checks two things: that structure.ndjson still matches its recorded fingerprint, and that the brain was scored at the current HEAD. Committing the folder is itself a commit, so a brain committed to a repo is always at least one commit behind and the second check can never pass on a fresh clone. --allow-stale keeps the integrity check strict and tolerates only that. Drop the flag when you build the brain in CI at the commit you are testing, where currency is real.

Agents are first-class

Every command takes --json and emits one machine-readable object, and exit codes are part of the contract: 0 ok, 1 check failed, 2 usage, 3 no understanding. CI can gate on them:

Terminal
npx spiderbrain impact --fail-over 200   # fail a PR whose blast exceeds 200 files
npx spiderbrain verify                   # fail a build whose folder is stale or edited (drop --allow-stale to require currency)

Ready-made workflows - a PR blast-radius comment and a freshness gate - are in examples/.

No folder? Registry fallback

When a repo carries no .spiderbrain/ folder, the reader checks the public SpiderBrain registry for an unofficial brain of the same repo (matched by the origin remote, clearly labeled, fingerprint-verified). The committed folder always wins when present; maintainers can publish the official one with npx spiderbrain create.

This repo eats its own dogfood

This repository carries its own committed .spiderbrain/ folder, derived from its real import graph (node scripts/build-own-brain.mjs, regenerated deterministically, verified in CI). Clone it and ask it about itself:

Terminal
npx spiderbrain keystones      # read/src/core.mjs is the load-bearing file
npx spiderbrain verify --allow-stale   # the committed fingerprint matches the bytes

Give your own repo understanding

server.ts
export SPIDERBRAIN_API_KEY=sb_live_...     # https://spiderbrain.ai/dashboard?tab=keys
npx spiderbrain create

Fetches your scored brain and writes the source-free .spiderbrain/ folder plus an AGENTS.md block. Commit both, and every agent that later touches the repo reads it.

Offline vs cloud

  • Offline (free, deterministic, from the committed bytes): structure, dependencies, blast radius, keystones. Same repo, same question, same answer, byte for byte.
  • Cloud (set SPIDERBRAIN_API_KEY): the why behind a file (the recorded decision and its reasoning), always-fresh scores, and semantic search. Get a key at https://spiderbrain.ai/dashboard?tab=keys.
server.ts
export SPIDERBRAIN_API_KEY=sb_live_...
npx spiderbrain why src/billing/charge.ts

What is in the folder

The committed .spiderbrain/ folder is source-free: file paths, structure, and an edge-derivable blast radius only. Never your source code. Never the scoring weights. Its exact contents and determinism guarantees are documented in SPEC.md.

Every folder carries a fingerprint in its manifest.json; the reader recomputes it on load, so a hand-edited or corrupted folder is flagged and the map you query is the map that was published.

This repo (three MIT packages + the spec)

  • spiderbrain/ β€” spiderbrain, the one command. A thin dispatcher over the two below.
  • read/ β€” @spiderbrain/read, consume: folder loader, blast-radius traversal, CLI, MCP server, cloud client. Zero dependencies.
  • create/ β€” @spiderbrain/create, produce: fetch your scored brain and write the understanding set + AGENTS.md.
  • SPEC.md β€” the .spiderbrain/ public folder format.

Each scoped package is independently installable: a CI job that only publishes understanding needs @spiderbrain/create alone; an MCP config that only reads points at @spiderbrain/read. spiderbrain is what you type when you just want the thing.

The engine that scores a brain (parsing and the scoring model) is proprietary and lives with SpiderBrain. What is open here is the format, the reader, and the producer client, so anyone can read or write a published understanding layer, or build a tool that does.

License

MIT. See LICENSE.

Related MCP Servers

View all in Biology & Bioinformatics View all alternatives
  • Medplum MCP logoMedplum MCP

    Securely access and manage FHIR healthcare data stored in Medplum.

    🧬 Biology & Bioinformatics1 views
    Compare vs Medplum MCP β†’
  • C
    Causely

    Causal reasoning for reliability: root cause, blast radius, and service health for agents.

    🧬 Biology & Bioinformatics0 views
    Compare vs Causely β†’
  • Rosetta MCP Server logoRosetta MCP Server

    Rosetta/PyRosetta protein modeling and Biotite translation for computational biology

    🧬 Biology & Bioinformatics2 views
    Compare vs Rosetta MCP Server β†’
  • HealthChain logoHealthChain

    Typed, validated FHIR tools for healthcare AI agents β€” build, read, validate, and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation reports built for fix-and-retry. pip install healthchain[mcp]

    🧬 Biology & Bioinformatics3 views
    Compare vs HealthChain β†’

Reviews

No reviews yet β€” be the first to share how this listing worked for you.

Frequently Asked Questions about Spiderbrain

Add the following block to your claude_desktop_config.json under mcpServers: "mcpServers": { "spiderbrain": { "command": "npx", "args": ["-y", "Spiderbrain"] } }

AllMCPs Directory Badge

Full Badge Customizer

Showcase your server listing on GitHub or your project documentation. Embed this dynamic SVG badge to highlight official listing status and live engagement.

Badge Style:
Live Dynamic SVG PreviewSpiderbrain AllMCPs Directory Badge
Markdown (GitHub README)
[![AllMCPs](https://allmcps.com/api/badge/spiderbrain?style=directory)](https://allmcps.com/mcp/spiderbrain)
HTML Embed
<a href="https://allmcps.com/mcp/spiderbrain"><img src="https://allmcps.com/api/badge/spiderbrain?style=directory" alt="Spiderbrain on AllMCPs" /></a>

Technical Specs & Signals

Category🧬Biology & Bioinformatics
More technical detailsExpand β–Ύ
TransportSTDIO
RuntimeNode.js
Views0
Unique ViewsTotal visits recorded for this listing page on AllMCPs.
Installs0
Installs & Copy ActionsTotal times users copied install commands or configuration snippets for this server.
GitHub stars3
GitHub Star CountTotal stargazers on GitHub representing community popularity (3 stars).
37Quality signal: Fair Β· 37/100How this signal is calculated β–Ύ
Server availabilityNot measured

Not scored for repo-hosted servers β€” we can't reach the running server, only its GitHub page. Hosted MCP endpoints are health-checked live.

Verified ownership10/20
Documentation & tools16/30
Adoption & activity2/15
Community engagement0/10

A guidance signal from public completeness & health data β€” not a user rating. New listings start lower and rise as they add docs, get verified, and grow adoption. Signals we can't observe for a listing are skipped, not counted against it.

Supply-chain signal

No high-severity advisories surfaced by our automated scan.

Critical 0High 0Medium 0Low 0

Scanned 3h ago via OSV.dev Β· spiderbrain (npm)

β˜… FeaturedMoxie Docs MCP logo

Moxie Docs MCP

MCP & Agent Skills for Automated Documentation, and codebase conventions + context

Explore Server β†’

Own this project?

This directory is pre-filled from public sources. Claim via GitHub README, site badge, or DNS TXT to unlock edit access and the Official badge β€” proof is checked automatically, then reviewed by our team.

Free dofollow backlink: add your website and place the AllMCPs badge on it β€” no claim needed. We detect it automatically and keep it verified as long as the badge stays live.

Claim & get free dofollow

Share & Embed

Add our SVG badge (dark/light directory styles) or embeddable widget to your site.

Explore more

More in 🧬 Biology & Bioinformatics β†’Alternatives to Spiderbrain β†’Install in Claude DesktopInstall in CursorInstall in VS Code