Biology, Medicine and Bioinformatics MCP Servers

Discover 32 Biology, Medicine and Bioinformatics MCP servers for AI agents. Browse, compare, and install Model Context Protocol tools that connect Claude, Cursor, and other clients to biology, medicine and bioinformatics capabilities. Popular picks include Encode Toolkit, ChatSpatial, Gph Mcp Server.

32 serversOpen in interactive directory
E

Encode Toolkit

ammawla
MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments.
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C

ChatSpatial

cafferychen777
MCP server for spatial transcriptomics analysis with 60+ integrated methods covering cell annotation, deconvolution, spatial statistics, and visualization.
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G

Gph Mcp Server

Crindo2
Healthcare service vendor matching for medical practices: 76,000+ curated vendors across 25 categories (billing, credentialing, EHR, compliance, legal) in all 50 US states.
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W

Wellness Cgm Mcp

davidmosiah
Local-first continuous glucose monitor MCP server for Dexcom Developer API and FreeStyle Libre via LibreLink Up.
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O

Onekgpd Mcp

dnaerys
real-time access to 1000 Genomes Project dataset
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F

Fulcra Context Mcp

fulcradynamics
MCP server for accessing personal health and biometric data including sleep stages, heart rate, HRV, glucose, workouts, calendar, and location via the Fulcra Life API with OAuth2 consent.
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G

Genomic Agent Discovery

HelixGenomics
Multi-agent MCP server for genomic analysis — specialized AI agents analyze raw DNA files across 16 databases (ClinVar, GWAS, gnomAD, CPIC, AlphaMissense, and more) and coordinate findings through shared MCP tools. Privacy-first, runs locally.
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U

Ucsc Genome Mcp

hlydecker
MCP server to interact with the UCSC Genome Browser API, letting you find genomes, chromosomes, and more.
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M

Medical Mcp

JamesANZ
An MCP server that provides access to medical information, drug databases, and healthcare resources. Enables AI assistants to query medical data, drug interactions, and clinical guidelines.
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B

Biothings Mcp

longevity-genie
MCP server to interact with the BioThings API, including genes, genetic variants, drugs, and taxonomic information.
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Gget Mcp

longevity-genie
MCP server providing a powerful bioinformatics toolkit for genomics queries and analysis, wrapping the popular gget library.
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O

Opengenes Mcp

longevity-genie
MCP server for a queryable database for aging and longevity research from the OpenGenes project.
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S

Synergy Age Mcp

longevity-genie
MCP server for the SynergyAge database of synergistic and antagonistic genetic interactions in longevity.
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L

Lecka Mcp

mgnirck
Race nutrition planning for endurance athletes. Calculates carb, sodium and fluid targets for marathons, ultras, cycling and triathlons. Returns personalised Lecka product recommendations by race type, conditions and athlete weight.
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P

Plant Genomics Mcp

musharna
32 tools for plant-genomics locus lookup across 11 public backends (Ensembl Plants, Phytozome, UniProtKB, KEGG, STRING-DB, Gramene, Europe PMC, QuickGO, NCBI BLAST, ATTED-II, BAR). Single-locus, parallel-batch, and cross-source synthesis variants; JSON output schemas and EDAM ontology tags on every tool. pipx install plant-genomics-mcp.
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Mymedi Ai Mcp Server

MyMedi-AI
Healthcare billing AI for agents: ICD-10/CPT/HCPCS code lookup (81,769 codes with RVU + OPPS pricing), prior auth prediction, medical NER, claims validation, denial-risk scoring, HIPAA compliance auditing, and NPI/drug enrichment. 20 tools, 10 free credits then pay-per-call via credits or anonymous USDC (x402). npx @mymedi-ai/mcp-server
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Heor Agent Mcp

neptun2000
HEOR (Health Economics and Outcomes Research) MCP server with 7 tools for literature search across 41 medical data sources (PubMed, NICE, CADTH, ICER, etc.), cost-effectiveness modeling (Markov/PartSA/PSA), and HTA dossier preparation for pharmaceutical and biotech teams.
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D

Dicom Hl7 Mcp Server

NyxToolsDev
The only MCP server bridging DICOM, HL7v2, and FHIR in one package. Cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding (GE, Siemens, Philips), and integration pattern knowledge. Built by a 19-year healthcare IT veteran. pip install dicom-hl7-mcp
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O

Omop Mcp

OHNLP
Map clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability.
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D

Dicomweb Mcp Server

PantelisGeorgiadis
A DICOMweb MCP server that exposes a DICOMweb-compliant DICOM archive to AI assistants, enabling search of studies, series and instances, metadata inspection, structured report reading, encapsulated PDF text extraction, and frame rendering.
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A

Aria Mcp Server

pkotecha-eng
Clinical research MCP server for trial coordinators and life sciences teams. Real-time access to PubMed (35M+ papers) and ClinicalTrials.gov (400K+ trials). No API key required.
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Pubmed Search

pubspro
Search PubMed and summarize biomedical literature, designed for AI health agents.
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Oura Mcp

Rajskij
Ask your Oura Ring about sleep, readiness, activity, stress and heart rate in ChatGPT or Claude, in any language. Read-only, token-efficient, self-hosted; 10 task-oriented tools grouped by how people actually ask.
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M

Mcp TechTrend

salwks
Multi-source academic + code + medical-regulatory trend monitoring (arXiv, PubMed, GitHub, Hugging Face, openFDA 510(k)/Recalls). Newspaper-style briefings, per-domain tuning, sandbox-safe Python launcher.
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B

Biorobotics

SEOSiri-Official
A stateless, deterministic Bio-Robotics Core Engine converting biological data (UniProt API) to Cartesian G-code coordinates using the Model Context Protocol. 🐍 🏠 🍎 🪟 🐧
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M

Medical Terminologies Mcp

SidneyBissoli
Unified MCP server for ICD-11 (WHO), LOINC, RxNorm, MeSH (NLM), ATC, CID-10 (Brazilian DataSUS), and optional SNOMED CT. 28 tools (34 with SNOMED) with structuredContent + outputSchema on every default tool. Hosted on Cloudflare Workers, listed on Smithery, and on npm.
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Uniprot Mcp

smaniches
Auditable UniProt MCP server: 41 tools over the UniProt knowledgebase (entries, features, variants, PTMs, GO terms, cross-references) with per-query SHA-256 provenance and offline replay. uvx uniprot-mcp-server
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O

Opdstar Nhi Mcp

tatsuju
Taiwan's first public MCP server for National Health Insurance (NHI) data — 234 rejection codes, 1,497 ICD-10→procedure mappings across 20 specialties, audit indicators (008/014/027/P043), and semantic wiki search over 8,232 chunks of official NHI documentation. Powered by OPDSTAR. Install: npx @opdstar/nhi-mcp.
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A

Apple Health Mcp Server

the-momentum
An MCP server that provides access to exported data from Apple Health. Data analytics included.
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Fhir Mcp Server

the-momentum
MCP Server that connects AI agents to FHIR servers. One example use case is querying patient history in natural language.
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D

Decoder 3am Mcp

thelongevityvault
Sleep disruption cause classifier using The Longevity Vault's 5-cause framework. Identifies the biological mechanism behind 3am wakeups from symptom descriptions, with tracked links to the full interactive 3AM Decoder.
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F

Fhir Mcp Server

wso2
Model Context Protocol server for Fast Healthcare Interoperability Resources (FHIR) APIs. Provides seamless integration with FHIR servers, enabling AI assistants to search, retrieve, create, update, and analyze clinical healthcare data with SMART-on-FHIR authentication support.
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