How do I connect a Biology, Medicine and Bioinformatics MCP server to Claude Desktop or Cursor?

To install a Biology, Medicine and Bioinformatics MCP server, select your desired server from the directory, copy the JSON configuration snippet, and add it to your client config file (such as claude_desktop_config.json or .cursor/mcp.json).

Are Biology, Medicine and Bioinformatics MCP servers free to use?

Yes, all Biology, Medicine and Bioinformatics MCP servers listed in this directory are open-source and free to integrate into compatible Model Context Protocol clients.

122 Biology, Medicine and Bioinformatics MCP Servers

Q: What are Biology, Medicine and Bioinformatics Model Context Protocol (MCP) servers?

Model Context Protocol (MCP) servers in the Biology, Medicine and Bioinformatics category allow AI assistants (such as Claude Desktop, Cursor, Windsurf, and Cline) to connect directly to biology, medicine and bioinformatics tools, APIs, and databases without manual copy-pasting.

Discover 122 Biology, Medicine and Bioinformatics MCP servers for AI agents. Browse, compare, and install Model Context Protocol tools that connect Claude, Cursor, and other clients to biology, medicine and bioinformatics capabilities. Popular picks include Gph MCP Server, Biothings MCP, Medical Terminologies MCP.

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Gph MCP Server

Crindo2

Healthcare service vendor matching for medical practices: 76,000+ curated vendors across 25 categories (billing, credentialing, EHR, compliance, legal) in all 50 US states.

4 0 0

Biothings MCP

longevity-genie

MCP server to interact with the BioThings API, including genes, genetic variants, drugs, and taxonomic information.

5 0 0

Medical Terminologies MCP

SidneyBissoli

Unified MCP server for ICD-11 (WHO), LOINC, RxNorm, MeSH (NLM), ATC, CID-10 (Brazilian DataSUS), and optional SNOMED CT. 28 tools (34 with SNOMED) with structuredContent + outputSchema on every default tool. Hosted on Cloudflare Workers, listed on Smithery, and on npm.

2 0 0

Fhir MCP Server

wso2

Model Context Protocol server for Fast Healthcare Interoperability Resources (FHIR) APIs. Provides seamless integration with FHIR servers, enabling AI assistants to search, retrieve, create, update, and analyze clinical healthcare data with SMART-on-FHIR authentication support.

3 0 0

Oura Ring MCP

Connect your Oura Ring to Claude AI assistants. Health metrics with smart analysis tools.

3 0 0

Opengenes MCP

longevity-genie

MCP server for a queryable database for aging and longevity research from the OpenGenes project.

3 0 0

Fhirhydrant

FHIR MCP server with SMART Backend Services, response compaction, FHIRPath, and guarded writes.

0 0 0

Heor Agent MCP

neptun2000

HEOR (Health Economics and Outcomes Research) MCP server with 7 tools for literature search across 41 medical data sources (PubMed, NICE, CADTH, ICER, etc.), cost-effectiveness modeling (Markov/PartSA/PSA), and HTA dossier preparation for pharmaceutical and biotech teams.

4 0 0

Synergy Age MCP

longevity-genie

MCP server for the SynergyAge database of synergistic and antagonistic genetic interactions in longevity.

3 0 0

Biomcp

genomoncology

Biomedical research server providing access to PubMed, ClinicalTrials.gov, and MyVariant.info.

3 0 0

Pubcrawl

PubMed literature search and US/UK drug labelling for AI assistants.

3 0 0

Tebra

MCP server for Tebra/Kareo practice management — patients, billing, scheduling, FHIR (45 tools)

2 0 0

MCP Simple Pubmed

andybrandt

MCP to search and read medical / life sciences papers from PubMed.

1 0 0

Mymedi AI MCP Server

MyMedi-AI

Healthcare billing AI for agents: ICD-10/CPT/HCPCS code lookup (81,769 codes with RVU + OPPS pricing), prior auth prediction, medical NER, claims validation, denial-risk scoring, HIPAA compliance auditing, and NPI/drug enrichment. 20 tools, 10 free credits then pay-per-call via credits or anonymous USDC (x402). npx @mymedi-ai/mcp-server

5 0 0

Last EHR — Medplum

Read-only Medplum chart search and patient context for MCP clients.

3 0 0

Dicomweb MCP Server

PantelisGeorgiadis

A DICOMweb MCP server that exposes a DICOMweb-compliant DICOM archive to AI assistants, enabling search of studies, series and instances, metadata inspection, structured report reading, encapsulated PDF text extraction, and frame rendering.

3 0 0

Pubmed MCP Server

Comprehensive PubMed MCP Server to search, retrieve, and analyze biomedical literature from NCBI.

0 0 0

Wellness Cgm MCP

davidmosiah

Local-first continuous glucose monitor MCP server for Dexcom Developer API and FreeStyle Libre via LibreLink Up.

3 0 0

Opdstar Nhi MCP

tatsuju

Taiwan's first public MCP server for National Health Insurance (NHI) data — 234 rejection codes, 1,497 ICD-10→procedure mappings across 20 specialties, audit indicators (008/014/027/P043), and semantic wiki search over 8,232 chunks of official NHI documentation. Powered by OPDSTAR. Install: npx @opdstar/nhi-mcp.

4 0 0

Dicom MCP

ChristianHinge

DICOM integration to query, read, and move medical images and reports from PACS and other DICOM compliant systems.

4 0 0

Fhir MCP Server

the-momentum

MCP Server that connects AI agents to FHIR servers. One example use case is querying patient history in natural language.

2 0 0

Clinicaltrialsgov MCP Server

Provides rich tools to search, retrieve, and analyze data from ClinicalTrials.gov API v2.

0 0 0

Clinicaltrials

ClinicalTrials MCP — wraps ClinicalTrials.gov API v2 (free, no auth)

1 0 0

Fda Devices

FDA medical-device regulatory intelligence from keyless openFDA datasets.

1 0 0

Phi Longevity Prism

Analyze biomarker panels with an MD-led clinical engine. Guideline-cited. Synthetic data only.

1 0 0

Europepmc

Europe PubMed Central — biomedical literature search and full text

2 0 0

Hpo Api

Human Phenotype Ontology — clinical phenotype terms + gene/disease annotations

2 0 0

Monarch Initiative

Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants

2 0 0

Medlineplus

MedlinePlus MCP — NIH consumer health info

1 0 0

Ema Medicines

EMA Medicines MCP — the European Medicines Agency's public medicines register.

0 0 0

Globocan

GLOBOCAN — the IARC/WHO Global Cancer Observatory.

0 0 0

Ebi Ols

EBI Ontology Lookup Service — 250+ biomedical ontologies

1 0 0

Who Tb

WHO Global Tuberculosis Programme — the TME data collection.

0 0 0

Myhealthfinder

MyHealthfinder MCP — U.S. preventive-services & health-screening guidance

1 0 0

Openfda

OpenFDA MCP — wraps the openFDA API (free, no auth required)

1 0 0

Medicare Coverage

Medicare coverage policy from CMS: national and local coverage determinations, plus open analyses

0 0 0

Nci Evs

NCI Thesaurus concepts and the other cancer-research vocabularies served by NCI Enterprise…

0 0 0

Supplement Advisor MCP

Evidence-based supplement guidance: clinical doses, form comparisons, interactions, cost-per-dose.

3 0 0

ChatSpatial

cafferychen777

MCP server for spatial transcriptomics analysis with 60+ integrated methods covering cell annotation, deconvolution, spatial statistics, and visualization.

1 0 0

Ema Article57

EMA Article 57 product data — every medicine with a valid marketing

0 0 0

Bioportal

BioPortal — NCBO's biomedical ontology repository (data.bioontology.org).

0 0 0

Withings Health Data

MCP server for Withings health data — sleep, activity, heart, and body metrics.

0 0 0

Gget MCP

longevity-genie

MCP server providing a powerful bioinformatics toolkit for genomics queries and analysis, wrapping the popular gget library.

2 0 0

Mychart

Connects to Epic MyChart patient portals: interactive login, list and download your own test results

1 0 0

Encode Toolkit

ammawla

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments.

3 0 0

Opentargets

Open Targets MCP server for targets, diseases, drugs, variants, and evidence

2 0 0

Inbody API MCP

MCP server for InBody body-composition data — scans, body fat, muscle mass, body water

2 0 0

Fulcra Context MCP

fulcradynamics

MCP server for accessing personal health and biometric data including sleep stages, heart rate, HRV, glucose, workouts, calendar, and location via the Fulcra Life API with OAuth2 consent.

4 0 0

Mosaic Pre Clinical Intelligence

Pre-clinical drug discovery intelligence — targets, compounds, patents, trials, whitespace

2 0 0

Plant Genomics MCP

musharna

32 tools for plant-genomics locus lookup across 11 public backends (Ensembl Plants, Phytozome, UniProtKB, KEGG, STRING-DB, Gramene, Europe PMC, QuickGO, NCBI BLAST, ATTED-II, BAR). Single-locus, parallel-batch, and cross-source synthesis variants; JSON output schemas and EDAM ontology tags on every tool. pipx install plant-genomics-mcp.

3 0 0

Ucsc Genome MCP

hlydecker

MCP server to interact with the UCSC Genome Browser API, letting you find genomes, chromosomes, and more.

4 0 0

Medplum MCP

Securely access and manage FHIR healthcare data stored in Medplum.

1 0 0

Alphafold Sovereign MCP

smaniches

AlphaFold MCP server integrating AlphaFold DB with eight additional public biomedical data sources, backed by a local SQLite knowledge graph for structural-confidence, variant, disease/phenotype, drug-target, and orthology workflows. uvx alphafold-sovereign-mcp

5 0 0

Dicom Hl7 MCP Server

NyxToolsDev

The only MCP server bridging DICOM, HL7v2, and FHIR in one package. Cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding (GE, Siemens, Philips), and integration pattern knowledge. Built by a 19-year healthcare IT veteran. pip install dicom-hl7-mcp

2 0 0

MedRecPro Drug Label Server

Search and export FDA drug labels by brand name, generic ingredient, or UNII code.

1 0 0

Openfda MCP Server

Query FDA data on drugs, food, devices, and recalls via openFDA. STDIO or Streamable HTTP.

1 0 0

Aria MCP Server

pkotecha-eng

Clinical research MCP server for trial coordinators and life sciences teams. Real-time access to PubMed (35M+ papers) and ClinicalTrials.gov (400K+ trials). No API key required.

3 0 0

Uniprot MCP

smaniches

Auditable UniProt MCP server: 41 tools over the UniProt knowledgebase (entries, features, variants, PTMs, GO terms, cross-references) with per-query SHA-256 provenance and offline replay. uvx uniprot-mcp-server

3 0 0

Marrow

Read-only MCP access to your own Apple Health data, mirrored from the Marrow iOS app.

1 0 0

Vaultbeat

Your AI agent reads your E2EE Apple Health data (sleep, HRV, cycle) — decrypted only locally

5 0 0

Browse all 122 Biology, Medicine and Bioinformatics servers →

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Frequently Asked Questions about Biology, Medicine and Bioinformatics MCP Servers

Model Context Protocol (MCP) servers in the Biology, Medicine and Bioinformatics category allow AI assistants (such as Claude Desktop, Cursor, Windsurf, and Cline) to connect directly to biology, medicine and bioinformatics tools, APIs, and databases without manual copy-pasting.