How do I connect a Biology, Medicine and Bioinformatics MCP server to Claude Desktop or Cursor?

To install a Biology, Medicine and Bioinformatics MCP server, select your desired server from the directory, copy the JSON configuration snippet, and add it to your client config file (such as claude_desktop_config.json or .cursor/mcp.json).

Are Biology, Medicine and Bioinformatics MCP servers free to use?

Yes, all Biology, Medicine and Bioinformatics MCP servers listed in this directory are open-source and free to integrate into compatible Model Context Protocol clients.

34 Biology, Medicine and Bioinformatics MCP Servers

Q: What are Biology, Medicine and Bioinformatics Model Context Protocol (MCP) servers?

Model Context Protocol (MCP) servers in the Biology, Medicine and Bioinformatics category allow AI assistants (such as Claude Desktop, Cursor, Windsurf, and Cline) to connect directly to biology, medicine and bioinformatics tools, APIs, and databases without manual copy-pasting.

Discover 34 Biology, Medicine and Bioinformatics MCP servers for AI agents. Browse, compare, and install Model Context Protocol tools that connect Claude, Cursor, and other clients to biology, medicine and bioinformatics capabilities. Popular picks include Medical Terminologies MCP, Gget MCP, Fhir MCP Server.

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Medical Terminologies MCP

SidneyBissoli

Unified MCP server for ICD-11 (WHO), LOINC, RxNorm, MeSH (NLM), ATC, CID-10 (Brazilian DataSUS), and optional SNOMED CT. 28 tools (34 with SNOMED) with structuredContent + outputSchema on every default tool. Hosted on Cloudflare Workers, listed on Smithery, and on npm.

2 0 0

Gget MCP

longevity-genie

MCP server providing a powerful bioinformatics toolkit for genomics queries and analysis, wrapping the popular gget library.

2 0 0

Fhir MCP Server

wso2

Model Context Protocol server for Fast Healthcare Interoperability Resources (FHIR) APIs. Provides seamless integration with FHIR servers, enabling AI assistants to search, retrieve, create, update, and analyze clinical healthcare data with SMART-on-FHIR authentication support.

2 0 0

Heor Agent MCP

neptun2000

HEOR (Health Economics and Outcomes Research) MCP server with 7 tools for literature search across 41 medical data sources (PubMed, NICE, CADTH, ICER, etc.), cost-effectiveness modeling (Markov/PartSA/PSA), and HTA dossier preparation for pharmaceutical and biotech teams.

3 0 0

Mymedi AI MCP Server

MyMedi-AI

Healthcare billing AI for agents: ICD-10/CPT/HCPCS code lookup (81,769 codes with RVU + OPPS pricing), prior auth prediction, medical NER, claims validation, denial-risk scoring, HIPAA compliance auditing, and NPI/drug enrichment. 20 tools, 10 free credits then pay-per-call via credits or anonymous USDC (x402). npx @mymedi-ai/mcp-server

5 0 0

Dicomweb MCP Server

PantelisGeorgiadis

A DICOMweb MCP server that exposes a DICOMweb-compliant DICOM archive to AI assistants, enabling search of studies, series and instances, metadata inspection, structured report reading, encapsulated PDF text extraction, and frame rendering.

3 0 0

Wellness Cgm MCP

davidmosiah

Local-first continuous glucose monitor MCP server for Dexcom Developer API and FreeStyle Libre via LibreLink Up.

2 0 0

Opdstar Nhi MCP

tatsuju

Taiwan's first public MCP server for National Health Insurance (NHI) data — 234 rejection codes, 1,497 ICD-10→procedure mappings across 20 specialties, audit indicators (008/014/027/P043), and semantic wiki search over 8,232 chunks of official NHI documentation. Powered by OPDSTAR. Install: npx @opdstar/nhi-mcp.

4 0 0

ChatSpatial

cafferychen777

MCP server for spatial transcriptomics analysis with 60+ integrated methods covering cell annotation, deconvolution, spatial statistics, and visualization.

1 0 0

Biothings MCP

longevity-genie

MCP server to interact with the BioThings API, including genes, genetic variants, drugs, and taxonomic information.

4 0 0

Encode Toolkit

ammawla

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments.

3 0 0

Opengenes MCP

longevity-genie

MCP server for a queryable database for aging and longevity research from the OpenGenes project.

3 0 0

Synergy Age MCP

longevity-genie

MCP server for the SynergyAge database of synergistic and antagonistic genetic interactions in longevity.

3 0 0

Fulcra Context MCP

fulcradynamics

MCP server for accessing personal health and biometric data including sleep stages, heart rate, HRV, glucose, workouts, calendar, and location via the Fulcra Life API with OAuth2 consent.

4 0 0

Plant Genomics MCP

musharna

32 tools for plant-genomics locus lookup across 11 public backends (Ensembl Plants, Phytozome, UniProtKB, KEGG, STRING-DB, Gramene, Europe PMC, QuickGO, NCBI BLAST, ATTED-II, BAR). Single-locus, parallel-batch, and cross-source synthesis variants; JSON output schemas and EDAM ontology tags on every tool. pipx install plant-genomics-mcp.

3 0 0

Dicom Hl7 MCP Server

NyxToolsDev

The only MCP server bridging DICOM, HL7v2, and FHIR in one package. Cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding (GE, Siemens, Philips), and integration pattern knowledge. Built by a 19-year healthcare IT veteran. pip install dicom-hl7-mcp

2 0 0

Uniprot MCP

smaniches

Auditable UniProt MCP server: 41 tools over the UniProt knowledgebase (entries, features, variants, PTMs, GO terms, cross-references) with per-query SHA-256 provenance and offline replay. uvx uniprot-mcp-server

3 0 0

Decoder 3am MCP

thelongevityvault

Sleep disruption cause classifier using The Longevity Vault's 5-cause framework. Identifies the biological mechanism behind 3am wakeups from symptom descriptions, with tracked links to the full interactive 3AM Decoder.

3 0 0

CareClinic Health Tracker

Connect CareClinic to supported AI assistants through a private OAuth flow. Review medication and supplement schedules, recent symptoms, mood, and wellness activity, and ask for observational summaries based on the information you track. Symptom and mood check-ins are previewed before saving and require explicit confirmation. Medication writes are disabled. CareClinic remains the source of record, and access can be revoked at any time.

Verified

1 0 0

Flowproof MCP

ajibadedapo

Run reproducible bioinformatics pipelines (Nextflow) from an AI assistant, with verifiable Workflow Run RO-Crate provenance (container digests, tool versions, input/output checksums). pip install flowproof-mcp

0 0 0

Gph MCP Server

Crindo2

Healthcare service vendor matching for medical practices: 76,000+ curated vendors across 25 categories (billing, credentialing, EHR, compliance, legal) in all 50 US states.

3 0 0

Apple Health MCP Server

the-momentum

An MCP server that provides access to exported data from Apple Health. Data analytics included.

3 0 0

Medical MCP

JamesANZ

An MCP server that provides access to medical information, drug databases, and healthcare resources. Enables AI assistants to query medical data, drug interactions, and clinical guidelines.

3 0 0

Fhir MCP Server

the-momentum

MCP Server that connects AI agents to FHIR servers. One example use case is querying patient history in natural language.

2 0 0

Omop MCP

OHNLP

Map clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability.

2 0 0

Ucsc Genome MCP

hlydecker

MCP server to interact with the UCSC Genome Browser API, letting you find genomes, chromosomes, and more.

3 0 0

MCP TechTrend

salwks

Multi-source academic + code + medical-regulatory trend monitoring (arXiv, PubMed, GitHub, Hugging Face, openFDA 510(k)/Recalls). Newspaper-style briefings, per-domain tuning, sandbox-safe Python launcher.

3 0 0

Aria MCP Server

pkotecha-eng

Clinical research MCP server for trial coordinators and life sciences teams. Real-time access to PubMed (35M+ papers) and ClinicalTrials.gov (400K+ trials). No API key required.

3 0 0

Pubmed Search

pubspro

Search PubMed and summarize biomedical literature, designed for AI health agents.

2 0 0

Onekgpd MCP

dnaerys

real-time access to 1000 Genomes Project dataset

1 0 0

Lecka MCP

mgnirck

Race nutrition planning for endurance athletes. Calculates carb, sodium and fluid targets for marathons, ultras, cycling and triathlons. Returns personalised Lecka product recommendations by race type, conditions and athlete weight.

2 0 0

Oura MCP

Rajskij

Ask your Oura Ring about sleep, readiness, activity, stress and heart rate in ChatGPT or Claude, in any language. Read-only, token-efficient, self-hosted; 10 task-oriented tools grouped by how people actually ask.

2 0 0

Biorobotics

SEOSiri-Official

A stateless, deterministic Bio-Robotics Core Engine converting biological data (UniProt API) to Cartesian G-code coordinates using the Model Context Protocol. 🐍 🏠 🍎 🪟 🐧

4 0 0

Pymol MCP

wjgoarxiv

Headless PyMOL for molecular visualization, GROMACS/LAMMPS MD trajectories, and clathrate-hydrate cage analysis: H-bond networks, F3/F4 order parameters, and TRACE cage perception + occupancy.

0 0 0

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Frequently Asked Questions about Biology, Medicine and Bioinformatics MCP Servers

Model Context Protocol (MCP) servers in the Biology, Medicine and Bioinformatics category allow AI assistants (such as Claude Desktop, Cursor, Windsurf, and Cline) to connect directly to biology, medicine and bioinformatics tools, APIs, and databases without manual copy-pasting.