Biology & Bioinformatics MCP servers

Privacy-first unofficial Google Health API v4 MCP server for health, sleep, activity, HR agents

An MCP FHIR server written in Go for EMR systems like Epic and Cerner

An MCP server that provides access to medical information, drug databases, and healthcare resources. Enables AI assistants to query medical data, drug interactions, and clinical guidelines.

Unified MCP server for ICD-11 (WHO), LOINC, RxNorm, MeSH (NLM), ATC, CID-10 (Brazilian DataSUS), and optional SNOMED CT. 28 tools (34 with SNOMED) with structuredContent + outputSchema on every default tool. Hosted on Cloudflare Workers, listed on Smithery, and on npm.

Connect your Oura Ring to Claude AI assistants. Health metrics with smart analysis tools.

Read your own Maccabi Healthcare records: labs, prescriptions, visits, referrals, PDFs.

PubMed literature search and US/UK drug labelling for AI assistants.

Turn scattered health data into answers you can trace. Self-hosted AI health data engine for lab reports, wearables and genetics, with a built-in MCP server. Run it with Docker and one LLM key, or keep every model local on llama.cpp.

Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.

Privacy-first Google Health API MCP server for health, sleep, activity and HR agents

Query FDA data on drugs, food, devices, and recalls via openFDA. STDIO or Streamable HTTP.

HEOR (Health Economics and Outcomes Research) MCP server with 7 tools for literature search across 41 medical data sources (PubMed, NICE, CADTH, ICER, etc.), cost-effectiveness modeling (Markov/PartSA/PSA), and HTA dossier preparation for pharmaceutical and biotech teams.

Biomedical research server providing access to PubMed, ClinicalTrials.gov, and MyVariant.info.

FHIR MCP server with SMART Backend Services, response compaction, FHIRPath, and guarded writes.

Per-function effect analysis for agents: blast radius, what reaches the network, gate verdicts.

Federated protein structure & function across experimental (PDB) and predicted (AlphaFold) models.

MCP server for discovering and querying CDC public health datasets via the Socrata SODA API.

BrAPI v2.1 MCP server — studies, germplasm, observations, genotypes, images, and pedigrees.

Look up genes, fetch sequences, predict variant consequences, find orthologs and xrefs via Ensembl.

WHO Global Health Observatory — 3,059 indicators across 194 member states.

Healthcare billing AI for agents: ICD-10/CPT/HCPCS code lookup (81,769 codes with RVU + OPPS pricing), prior auth prediction, medical NER, claims validation, denial-risk scoring, HIPAA compliance auditing, and NPI/drug enrichment. 20 tools, 10 free credits then pay-per-call via credits or anonymous USDC (x402). npx @mymedi-ai/mcp-server

Offline US medical code lookup and crosswalk — ICD-10-CM, ICD-10-PCS, HCPCS Level II. Keyless.

Pseudonymise and restore patient identifiers & PII in text — local, HIPAA Safe Harbor mode.

Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.

Brazil hospital admissions (SIH/SUS, 1992-2025): causes, series, ICSAP, rates per 100k. 12 tools.

Official public, read-only Model Context Protocol server from Helena Bioinformatics for biomedical literature discovery. Agents can search PubMed and scholarly research, resolve PMID, DOI, and PMCID identifiers, inspect publication metadata, find related papers, traverse bounded citation graphs, explore semantic literature neighborhoods, and check corpus coverage. Use the hosted Streamable HTTP endpoint https://api.helena.bio/noodle/v1/mcp; no npm or npx package is required.

Educational dermatology knowledge and lesion tooling. No credentials needed. Not a medical device.

Search, lookup, map, and navigate OMOP medical vocabularies via AI agents

MyAtriumHealth (Epic MyChart) records via your signed-in browser tab

Search GBIF species taxonomy, occurrence records, datasets, and publishers.

Medicare and commercial payer policies, prior auth, claim risk, and medical codes from Backwork.

Look up allele frequencies by ancestry, gene constraint, variants, and coverage over gnomAD.

Structural code intelligence over MCP: symbols, callers, imports and blast radius, 40+ languages.

Look up US healthcare providers in the NPPES NPI registry and resolve NUCC specialty codes.

MCP to search and read medical / life sciences papers from PubMed.

A DICOMweb MCP server that exposes a DICOMweb-compliant DICOM archive to AI assistants, enabling search of studies, series and instances, metadata inspection, structured report reading, encapsulated PDF text extraction, and frame rendering.

MCP server and TypeScript SDK for OOREP homeopathic repertory and materia medica reference data.

PubMed MCP — wraps the NCBI E-utilities API (biomedical literature, free, no auth)

MCP server for Tebra/Kareo practice management — patients, billing, scheduling, FHIR (45 tools)

Model Context Protocol server for Fast Healthcare Interoperability Resources (FHIR) APIs. Provides seamless integration with FHIR servers, enabling AI assistants to search, retrieve, create, update, and analyze clinical healthcare data with SMART-on-FHIR authentication support.

AlphaFold DB MCP — predicted protein structures.

Open healthcare quality measures: CQL, SQL and FHIR with provenance and known issues

TGA ARTG — the Australian Register of Therapeutic Goods, the Therapeutic

CMS Open Data MCP — US Centers for Medicare & Medicaid Services.

MCP Server for evipedia.ai — evidence-based reviews of health & longevity interventions

DICOM integration to query, read, and move medical images and reports from PACS and other DICOM compliant systems.

OpenFDA MCP — wraps the openFDA API (free, no auth required)

Veterinary FDA MCP — openFDA Animal & Veterinary adverse events, pet/animal

ITIS (Integrated Taxonomic Information System) MCP.

MCP Server that connects AI agents to FHIR servers. One example use case is querying patient history in natural language.

Deterministic axe-core accessibility scanning (WCAG 2.1 AA, EN 301 549, PDF/UA) through a wcagc account: scan any public URL or PDF, crawl a whole registered site, replay saved multi-step journeys, and read violation trends. Returns structured findings — rule, severity counts and the success criteria involved — so the assistant reasons over real results rather than guessing from markup. Every scan result carries an automated-coverage disclaimer instead of a score or a pass/fail verdict. Hosted at https://mcp.wcagc.com/mcp, or run it locally with npx -y @wcagc/mcp.

EMDB (EBI Electron Microscopy Data Bank) MCP — keyless.

Regulatory Catalysts MCP — high-value biotech regulatory calendar events (keyless).

FDA medical-device regulatory intelligence from keyless openFDA datasets.

Structural graph map of any codebase for AI coding assistants. Scans entities, relationships, and feature flows across 13 languages so LLMs navigate by structure instead of grepping through everything.

Phase 2/3 clinical trial design via gsDesign / gsDesign2: sample size, GS boundaries, multiplicity

SymMap v2 — Traditional Chinese Medicine association graph from symmap.org