Biology, Medicine and Bioinformatics MCP Servers

Model Context Protocol servers in the Biology, Medicine and Bioinformatics category.

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Gget MCP

longevity-genie

MCP server providing a powerful bioinformatics toolkit for genomics queries and analysis, wrapping the popular gget library.

Apple Health MCP Server

An MCP server that provides access to exported data from Apple Health. Data analytics included.

Medical Terminologies MCP

Unified MCP server for ICD-11 (WHO), LOINC, RxNorm, MeSH (NLM), ATC, CID-10 (Brazilian DataSUS), and optional SNOMED CT. 28 tools (34 with SNOMED) with structuredContent + outputSchema on every default tool. Hosted on Cloudflare Workers, listed on Smithery, and on npm.

Heor Agent MCP

HEOR (Health Economics and Outcomes Research) MCP server with 7 tools for literature search across 41 medical data sources (PubMed, NICE, CADTH, ICER, etc.), cost-effectiveness modeling (Markov/PartSA/PSA), and HTA dossier preparation for pharmaceutical and biotech teams.

Wellness Cgm MCP

Local-first continuous glucose monitor MCP server for Dexcom Developer API and FreeStyle Libre via LibreLink Up.

Mymedi AI MCP Server

Healthcare billing AI for agents: ICD-10/CPT/HCPCS code lookup (81,769 codes with RVU + OPPS pricing), prior auth prediction, medical NER, claims validation, denial-risk scoring, HIPAA compliance auditing, and NPI/drug enrichment. 20 tools, 10 free credits then pay-per-call via credits or anonymous USDC (x402). npx @mymedi-ai/mcp-server

Fhir MCP Server

Model Context Protocol server for Fast Healthcare Interoperability Resources (FHIR) APIs. Provides seamless integration with FHIR servers, enabling AI assistants to search, retrieve, create, update, and analyze clinical healthcare data with SMART-on-FHIR authentication support.

Dicomweb MCP Server

PantelisGeorgiadis

A DICOMweb MCP server that exposes a DICOMweb-compliant DICOM archive to AI assistants, enabling search of studies, series and instances, metadata inspection, structured report reading, encapsulated PDF text extraction, and frame rendering.

Medical MCP

An MCP server that provides access to medical information, drug databases, and healthcare resources. Enables AI assistants to query medical data, drug interactions, and clinical guidelines.

Fhir MCP Server

MCP Server that connects AI agents to FHIR servers. One example use case is querying patient history in natural language.

Opdstar Nhi MCP

Taiwan's first public MCP server for National Health Insurance (NHI) data — 234 rejection codes, 1,497 ICD-10→procedure mappings across 20 specialties, audit indicators (008/014/027/P043), and semantic wiki search over 8,232 chunks of official NHI documentation. Powered by OPDSTAR. Install: npx @opdstar/nhi-mcp.

ChatSpatial

MCP server for spatial transcriptomics analysis with 60+ integrated methods covering cell annotation, deconvolution, spatial statistics, and visualization.

Omop MCP

Map clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability.

Biothings MCP

longevity-genie

MCP server to interact with the BioThings API, including genes, genetic variants, drugs, and taxonomic information.

Encode Toolkit

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments.

Opengenes MCP

longevity-genie

MCP server for a queryable database for aging and longevity research from the OpenGenes project.

Synergy Age MCP

longevity-genie

MCP server for the SynergyAge database of synergistic and antagonistic genetic interactions in longevity.

Fulcra Context MCP

MCP server for accessing personal health and biometric data including sleep stages, heart rate, HRV, glucose, workouts, calendar, and location via the Fulcra Life API with OAuth2 consent.

Flowproof MCP

Run reproducible bioinformatics pipelines (Nextflow) from an AI assistant, with verifiable Workflow Run RO-Crate provenance (container digests, tool versions, input/output checksums). pip install flowproof-mcp

CareClinic Health Tracker

Connect CareClinic to supported AI assistants through a private OAuth flow. Review medication and supplement schedules, recent symptoms, mood, and wellness activity, and ask for observational summaries based on the information you track. Symptom and mood check-ins are previewed before saving and require explicit confirmation. Medication writes are disabled. CareClinic remains the source of record, and access can be revoked at any time.

Ucsc Genome MCP

MCP server to interact with the UCSC Genome Browser API, letting you find genomes, chromosomes, and more.

MCP TechTrend

Multi-source academic + code + medical-regulatory trend monitoring (arXiv, PubMed, GitHub, Hugging Face, openFDA 510(k)/Recalls). Newspaper-style briefings, per-domain tuning, sandbox-safe Python launcher.

Plant Genomics MCP

32 tools for plant-genomics locus lookup across 11 public backends (Ensembl Plants, Phytozome, UniProtKB, KEGG, STRING-DB, Gramene, Europe PMC, QuickGO, NCBI BLAST, ATTED-II, BAR). Single-locus, parallel-batch, and cross-source synthesis variants; JSON output schemas and EDAM ontology tags on every tool. pipx install plant-genomics-mcp.

Dicom Hl7 MCP Server

The only MCP server bridging DICOM, HL7v2, and FHIR in one package. Cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding (GE, Siemens, Philips), and integration pattern knowledge. Built by a 19-year healthcare IT veteran. pip install dicom-hl7-mcp

Aria MCP Server

Clinical research MCP server for trial coordinators and life sciences teams. Real-time access to PubMed (35M+ papers) and ClinicalTrials.gov (400K+ trials). No API key required.

Uniprot MCP

Auditable UniProt MCP server: 41 tools over the UniProt knowledgebase (entries, features, variants, PTMs, GO terms, cross-references) with per-query SHA-256 provenance and offline replay. uvx uniprot-mcp-server

Pubmed Search

Search PubMed and summarize biomedical literature, designed for AI health agents.

Biorobotics

SEOSiri-Official

A stateless, deterministic Bio-Robotics Core Engine converting biological data (UniProt API) to Cartesian G-code coordinates using the Model Context Protocol. 🐍 🏠 🍎 🪟 🐧

Decoder 3am MCP

thelongevityvault

Sleep disruption cause classifier using The Longevity Vault's 5-cause framework. Identifies the biological mechanism behind 3am wakeups from symptom descriptions, with tracked links to the full interactive 3AM Decoder.

Gph MCP Server

Healthcare service vendor matching for medical practices: 76,000+ curated vendors across 25 categories (billing, credentialing, EHR, compliance, legal) in all 50 US states.