Best Alternatives to Uniprot MCP Server

Protein MCP Server

Runtime: bunx

Federated protein structure & function across experimental (PDB) and predicted (AlphaFold) models.

Pubmed MCP Server

Runtime: bunx

Comprehensive PubMed MCP Server to search, retrieve, and analyze biomedical literature from NCBI.

Rosetta MCP Server

Runtime: uvx

Rosetta/PyRosetta protein modeling and Biotite translation for computational biology

Pubchem MCP Server

Runtime: bunx

MCP server for PubChem. Search compounds, properties, safety, bioactivity, xrefs, and summaries.

EasyDocForms

Runtime: npx

Healthcare intake for agents: import blank PDFs, create patient fill links, fetch completed PDFs.

HealthChain

Runtime: uvx

Provides typed, validated FHIR tools for agents to create, inspect, code, and check healthcare resources.

Spiderbrain

Runtime: npx

Deterministic context layer for your codebase: change impact, blast radius, answers with receipts.

Prism

Runtime: npx

Local-first repo intelligence for agents: DNA, health, blast radius, and Dispatch jobs.

Chembl MCP Server

Runtime: bunx

Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.

Healthcare Fhir MCP

Runtime: npx

Healthcare Fhir tools for AI agents. Capabilities: search patients, get patient, search cond...

Galaxy MCP

Runtime: uvx

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

Clinical Trials AI MCP

Runtime: npx

MCP server for clinical trials ai. Features search trials, check eligibility, get trial deta...