genomics MCP servers & tools

STRING protein-protein interaction networks across ~12k organisms

Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation

BOLD Systems (Barcode of Life Data System, University of Guelph) — the global DNA barcode…

MCP server providing a powerful bioinformatics toolkit for genomics queries and analysis, wrapping the popular gget library.

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments.

MCP server to interact with the UCSC Genome Browser API, letting you find genomes, chromosomes, and more.

real-time access to 1000 Genomes Project dataset

Folklore MCP 1.5.0 is Helena Bioinformatics’ public, read-only bioinformatics MCP for genomic variant interpretation, ClinGen gene-disease evidence and literature. Seven tools include get_gene_disease_associations (gene symbol/HGNC ID to diseases) and search_disease_genes (MONDO ID/disease name to genes), preserving inheritance, source classifications and provenance. Existing GRCh38 germline variant and literature tools remain available, alongside the optional support_helena helper. Streamable HTTP; no account or API key. No patient data, raw DNA/VCF ingestion or batch processing. Results require professional review and are not diagnoses.

Access 30+ bioinformatics tools from 14 databases.

Gencove consumer genomics: profile, kit status, ancestry, PRS, raw data. Requires Gencove auth.

MyVariant.info MCP.

Hosted DNA language models: promoter, splice, enhancer, chromatin, expression, annotation

NCBI Datasets — the US National Library of Medicine's genome, gene and taxonomy reference service…