Side-by-side comparison of two Model Context Protocol servers — install paths, tools, quality signals, and directory engagement so you can pick the right one for Claude, Cursor, and other MCP clients.
AlphaFold MCP server integrating AlphaFold DB with eight additional public biomedical data sources, backed by a local SQLite knowledge graph for structural-confidence, variant, disease/phenotype, drug-target, and orthology workflows. uvx alphafold-sovereign-mcp
Code-intelligence engine that indexes a repo into a persistent knowledge graph — functions, classes, call chains, HTTP routes, cross-service links. 159 languages via tree-sitter + Hybrid LSP, sub-ms structural queries, 99% fewer tokens than grep. Single static binary, zero dependencies, 100% local. npx codebase-memory-mcp
Quality signal
52/100 (Fair)
55/100 (Good)
Install path
uvx · high
uvx · high
Engagement
0 0 0 4
4 1 1 38,052
Tools
lookup_diseasesearch_diseaseslookup_phenotypeget_gene_phenotype_profileget_disease_targetsget_target_diseases+24 more
Indexes 158 languages via tree-sitter and Hybrid LSPPersistent knowledge graph of code elements and relationsSingle static binary with zero runtime dependenciesSub-millisecond structural queries using CypherBuilt-in 3D graph visualization UI (optional)15 MCP tools including search, trace, architecture analysis
