Side-by-side comparison of two Model Context Protocol servers — install paths, tools, quality signals, and directory engagement so you can pick the right one for Claude, Cursor, and other MCP clients.
Code-intelligence engine that indexes a repo into a persistent knowledge graph — functions, classes, call chains, HTTP routes, cross-service links. 159 languages via tree-sitter + Hybrid LSP, sub-ms structural queries, 99% fewer tokens than grep. Single static binary, zero dependencies, 100% local. npx codebase-memory-mcp
AlphaFold MCP server integrating AlphaFold DB with eight additional public biomedical data sources, backed by a local SQLite knowledge graph for structural-confidence, variant, disease/phenotype, drug-target, and orthology workflows. uvx alphafold-sovereign-mcp
Quality signal
55/100 (Good)
52/100 (Fair)
Install path
uvx · high
uvx · high
Engagement
4 1 1 38,052
0 0 0 4
Tools
Indexes 158 languages via tree-sitter and Hybrid LSPPersistent knowledge graph of code elements and relationsSingle static binary with zero runtime dependenciesSub-millisecond structural queries using CypherBuilt-in 3D graph visualization UI (optional)15 MCP tools including search, trace, architecture analysis
lookup_diseasesearch_diseaseslookup_phenotypeget_gene_phenotype_profileget_disease_targetsget_target_diseases+24 more
