Github MCP vs Atlassian MCP Server
A side-by-side look at the Github MCP and Atlassian MCP Server MCP servers: transport, auth, tools, quality signals, and the config to install either one in Claude, Cursor, Windsurf or VS Code.
Verdict: choose Github MCP for version control work as a local process; choose Atlassian MCP Server for version control over a hosted endpoint. You can also run both side by side in one mcpServers block.
Which MCP server should you choose?
Choose Github MCP when
- You need dedicated capabilities in the Version Control domain.
- You prefer a local stdio subprocess transport.
- You have the keys it needs:
GITHUB_MCP_ENABLE_WRITE, GITHUB_TOKEN. - You want tools like
get_repo, list_issues, get_issue.
Choose Atlassian MCP Server when
- You need dedicated capabilities in the Version Control domain.
- You prefer a remote HTTP/SSE transport.
- Its auth model fits you: other.
Feature & specification comparison
Rows where the two servers differ are marked.
| Spec | ||
|---|---|---|
| Category | Version Control | Version Control |
| Quality signal | 51/100 · Good | 80/100 · Excellent |
| Install command | Confirmed | Confirmed |
| Transport | Local subprocess (stdio) | Remote HTTP/SSE |
| Auth | Not declared | other |
| Pricing | Not declared | Free |
| Required env vars | GITHUB_MCP_ENABLE_WRITEGITHUB_TOKEN | None listed |
| Verified owner | Community listing | Verified |
| GitHub stars | 0 | 1,120 |
| Directory activity | 5 views 0 installs 0 upvotes | 9 views 0 installs 1 upvotes |
| Tools | 14 | Not listed |
| Full listing | View Github MCP | View Atlassian MCP Server |
Tools & capabilities
Github MCP tools 14
get_repoRepo metadata (stars, language, license, default branch, archived flag...)list_issuesList issues on a repo (PRs filtered out)get_issueFetch a single issuelist_pull_requestsList pull requests on a repoget_pull_requestFetch a single pull requestget_file_contentRead a repo file's content (base64-decoded, binary detected not decoded)search_reposSearch public repositoriesget_userPublic user/org profilelist_commitsList commits on a branch/refcreate_issueOpen an issuecomment_on_issueComment on an issue/PRupdate_issue_stateOpen/close an issue- +2 more on the listing page
Atlassian MCP Server tools
No tool names declared yet. Check the project README from the listing page.
Ready-to-paste client configs
Paste either block (or both) into your client config, e.g. claude_desktop_config.json or ~/.cursor/mcp.json. We only show a config when the install command is confirmed.
Github MCP
{
"mcpServers": {
"github-mcp": {
"command": "uvx",
"args": [
"jaimenbell-github-mcp"
],
"env": {
"GITHUB_MCP_ENABLE_WRITE": "YOUR_GITHUB_MCP_ENABLE_WRITE_HERE",
"GITHUB_TOKEN": "YOUR_GITHUB_TOKEN_HERE"
}
}
}
}
Atlassian MCP Server
{
"mcpServers": {
"atlassian-mcp-server": {
"url": "https://mcp.atlassian.com/v2/mcp"
}
}
}
Frequently asked questions
Github MCP is categorized under Version Control and uses a local stdio subprocess. Atlassian MCP Server belongs to Version Control and uses a remote HTTP/SSE transport. Pick Github MCP for version control work and Atlassian MCP Server for version control.
Copy the mcpServers block from the config section on this page into your client's config (for example claude_desktop_config.json or ~/.cursor/mcp.json), then fully restart the client.
Github MCP has no declared pricing — check the project's own site. Atlassian MCP Server is listed as free. Auth: other. If a server needs environment variables such as API keys, define them under the env key in your client's MCP config.
Yes. MCP clients support multiple servers: add github-mcp and atlassian-mcp-server as separate keys in the same mcpServers object, and your assistant will call tools from either one.
On AllMCPs, Github MCP has a quality signal of 51/100 (Good) with 5 views, 0 installs and 0 GitHub stars. Atlassian MCP Server has 80/100 (Excellent) with 9 views, 0 installs and 1,120 GitHub stars.