Atlassian Mcp Server vs Github Mcp Server

In-depth architectural comparison of the Atlassian Mcp Server and Github Mcp Server MCP servers. Compare execution transports, security boundaries, tool capabilities, quality scores, and ready-to-paste client installation snippets for Claude, Cursor, Windsurf, and VS Code.

Which MCP Server Should You Choose?

Choose Atlassian Mcp Server when:

• You need dedicated capabilities in the Version Control domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: No auth required (Free / Open Source).

Explore Atlassian Mcp Server Details

Choose Github Mcp Server when:

• You need dedicated capabilities in the Version Control domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: API Key required (Free / Open Source).
• You have access to required keys: GITHUB_MCP_PAT.
• Primary tools included: Repository and code file browsing, Issue and pull request automation, CI/CD workflow monitoring and insights.

Explore Github Mcp Server Details

Feature & Specification Comparison

Specification	Atlassian Mcp Server Version Control	Github Mcp Server github Version Control
Summary	Official remote MCP server for Atlassian. Securely connect Jira, Confluence, Jira Service Management, Bitbucket, and Compass to Claude, ChatGPT, Cursor, VS Code, and other AI tools using OAuth 2.1 or API tokens.	Official GitHub server for integration with repository management, PRs, issues, and more.
Category & Scope	Version Control

Tools & Capabilities Breakdown

Ready-to-Paste Client Configurations

Paste either (or both) of these JSON server blocks into your client config file (e.g. claude_desktop_config.json or ~/.cursor/mcp.json).

{
  "mcpServers": {
    "atlassian-mcp-server": {
      "command": "npx",
      "args": [
        "-y",
        "atlassian-mcp-server"
      ]
    }
  }
}

{
  "mcpServers": {
    "github-github-mcp-server": {
      "command": "npx",
      "args": [
        "-y",
        "github-github-mcp-server"
      ],
      "env": {
        "GITHUB_MCP_PAT": "YOUR_GITHUB_MCP_PAT_HERE"
      }
    }
  }
}

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