Best Alternatives to Genomics MCP

Medplum MCP

Runtime not confirmed

Securely access and manage FHIR healthcare data stored in Medplum.

Sniff MCP

Runtime: uvx

Canine genomics for agents: breed allele frequencies + AI pathogenicity over the open Sniff Atlas

Ensembl

Runtime: npx

Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation

Prism

Runtime: npx

Local-first repo intelligence for agents: DNA, health, blast radius, and Dispatch jobs.

HealthChain

Runtime: uvx

Provides typed, validated FHIR tools for agents to create, inspect, code, and check healthcare resources.

Galaxy MCP

Runtime: uvx

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

GWAS Bioinformatics MCP Server

Runtime: uvx

Access 30+ bioinformatics tools from 14 databases.

MCP Pharma

Runtime: uvx

Drug reference: GRLS, VEDL prices, Roszdravnadzor series recalls. Not medical advice.

Rosetta MCP Server

Runtime: uvx

Rosetta/PyRosetta protein modeling and Biotite translation for computational biology

Sourcebook

Runtime: npx

Live codebase intelligence for AI agents: conventions, blast radius, import graphs, git insights.

ClinicMarketIQ Public Data

Runtime: Remote (SSE)

Read-only U.S. healthcare dataset metadata, schemas, immutable downloads, and checksums.

Dep Oracle

Runtime: npx

Predictive dependency security engine. Trust scores, zombie detection, blast radius analysis.