What is the main functional difference between Codetopo — code graph for AI agents and Dep Oracle?

Codetopo — code graph for AI agents is categorized under Biology & Bioinformatics and uses an install path we have not confirmed yet. Dep Oracle belongs to Biology & Bioinformatics and uses a local stdio subprocess. Pick Codetopo — code graph for AI agents for biology & bioinformatics work and Dep Oracle for biology & bioinformatics.

How do I install Codetopo — code graph for AI agents or Dep Oracle in Claude Desktop, Cursor, or Windsurf?

Copy the mcpServers block from the config section on this page into your client's config (for example claude_desktop_config.json or ~/.cursor/mcp.json), then fully restart the client. Codetopo — code graph for AI agents has no confirmed install command yet — follow its own setup instructions.

Are Codetopo — code graph for AI agents and Dep Oracle free to use, or do they require API keys?

Codetopo — code graph for AI agents is listed as free. Auth: no auth required. Dep Oracle has no declared pricing — check the project's own site. If a server needs environment variables such as API keys, define them under the env key in your client's MCP config.

Can I run both Codetopo — code graph for AI agents and Dep Oracle at the same time in my AI client?

Yes. MCP clients support multiple servers: add codetopo-code-graph-for-ai-agents and dep-oracle as separate keys in the same mcpServers object, and your assistant will call tools from either one.

Which MCP server has higher directory engagement and quality ratings?

On AllMCPs, Codetopo — code graph for AI agents has a quality signal of 36/100 (Fair) with 0 views, 0 installs and 1 GitHub stars. Dep Oracle has 37/100 (Fair) with 1 views, 0 installs and 0 GitHub stars.

Codetopo — code graph for AI agents vs Dep Oracle

A side-by-side look at the Codetopo — code graph for AI agents and Dep Oracle MCP servers: transport, auth, tools, quality signals, and the config to install either one in Claude, Cursor, Windsurf or VS Code.

Codetopo — code graph for AI agentsBiology & BioinformaticsDomain-blind code graphs for AI agents: symbols, calls, blast radius, proof-checked snapshots.36FairAuth: no auth required

Dep OracleBiology & Bioinformatics · Local subprocess (stdio)Predictive dependency security engine. Trust scores, zombie detection, blast radius analysis.37FairAuth: not declared

Verdict: choose Codetopo — code graph for AI agents for biology & bioinformatics work; choose Dep Oracle for biology & bioinformatics as a local process. You can also run both side by side in one mcpServers block.

Spec	C Codetopo — code graph for AI agents	Dep Oracle
Category	Biology & Bioinformatics	Biology & Bioinformatics
Quality signal	36/100 · Fair	37/100 · Fair
Install command	Not confirmed yet	Confirmed
Transport	—	Local subprocess (stdio)
Auth	No auth required	Not declared
Pricing	Free	Not declared
Required env vars	None listed	None listed
Verified owner	Community listing	Community listing
GitHub stars	1	0
Directory activity	0 views 0 installs 0 upvotes	1 views 0 installs 0 upvotes
Tools	Not listed	Not listed
Full listing	View Codetopo — code graph for AI agents	View Dep Oracle

Codetopo — code graph for AI agents vs Dep Oracle

Which MCP server should you choose?

Choose Codetopo — code graph for AI agents when

Choose Dep Oracle when

Feature & specification comparison

Tools & capabilities

Codetopo — code graph for AI agents tools

Dep Oracle tools

Ready-to-paste client configs