Codeindex vs Folklore Clinical Variant Interpretation MCP

status

Index stats: file count, symbol count, indexing state, token savings %, the indexed `workspace` and whether a `watcher` is live

search

Trigram-accelerated full-text search across all indexed files

find_symbol

Find symbol definitions (functions, structs, classes…) by name

find_word

Exact word/identifier lookup in the inverted word index

find_callers

Approximate callers of a symbol (heuristic, no full name resolution)

get_outline

Structural outline of a file (symbols, line counts)

get_tree

Directory tree with file metadata

get_imports

What files does a given file import/depend on

get_imported_by

Reverse dependencies — who imports this file

get_change_impact

Transitive blast radius: what breaks if a file changes

plan_change

Full refactor plan for a symbol or file — definitions, callers, file role, literals, blast radius

get_hot_files

Recently changed files sorted by recency

search_variant_evidence

Interpret this variant, explain what this HGVS means, or review this VUS. Use for human genomic variant analysis within bioinformatics workflows, including review of an already identified WGS/WES variant. Use when a user asks to classify or interpret pathogenicity, review a VUS, check available ClinVar assertions or population-frequency evidence, or resolve a variant notation. Classify, interpret or resolve one public GRCh38 germline SNV or simple indel smaller than 50 bp. Accepts coordinates, genomic/coding/protein HGVS, SPDI or rsID. Returns normalized variant identity, automated ACMG/AMP decision support, evidence, provenance and explicit limitations. This is variant-level decision support for professional review. It does not evaluate patient context and must not be presented as a diagnosis or treatment recommendation. Never choose a candidate when resolution is ambiguous.

search_variant_literature

Resolve one public GRCh38 germline variant and retrieve relevant publications from Folklore's PubMed-derived genetics corpus. Exact variant mentions rank ahead of broader gene associations. Use when a user asks what has been published about a variant, gene or associated condition. Associations do not establish causality, pathogenicity or a diagnosis and do not change Folklore's ACMG/AMP classification.

get_publication_details

Retrieve the complete public bibliographic record for one PMID from Folklore's PubMed-derived genetics corpus. Returns the full abstract, authors, journal metadata, publication and MeSH terms, gene and variant mentions, retraction status, and PubMed/PMC links. Use after literature search when a user asks to inspect a specific publication. This is read-only professional literature evidence and contains no patient context.