A side-by-side look at the Clinicaltrialsgov MCP Server and Git MCP servers: transport, auth, tools, quality signals, and the config to install either one in Claude, Cursor, Windsurf or VS Code.
Verdict: choose Clinicaltrialsgov MCP Server for biology, medicine and bioinformatics work as a local process; choose Git for other tools and integrations as a local process. You can also run both side by side in one mcpServers block.
clinicaltrials_search_studies, clinicaltrials_get_study_record, clinicaltrials_get_study_count.create_entities, create_relations, add_observations.Rows where the two servers differ are marked.
| Spec | ||
|---|---|---|
| Category | Biology, Medicine and Bioinformatics | Other Tools and Integrations |
| Quality signal | 61/100 · Good | 89/100 · Excellent |
| Install command | Confirmed | Confirmed |
| Transport | Local subprocess (stdio) | Local subprocess (stdio) |
| Auth | Not declared | No auth required |
| Pricing | Not declared | Free |
| Required env vars | None listed | None listed |
| Verified owner | Community listing | Verified |
| GitHub stars | 99 | 91,289 |
| Directory activity | 1 views 0 installs 0 upvotes | 39 views 0 installs 0 upvotes |
| Tools | 7 | 9 |
| Full listing | View Clinicaltrialsgov MCP Server | View Git |
clinicaltrials_search_studiesSearch studies with full-text and field-specific queries, status/phase/geographic filters, pagination, sorting, and field selectionclinicaltrials_get_study_recordFetch a single study by NCT ID — full protocol record with optional location/outcome/reference capsclinicaltrials_get_study_countFast total study count for a query, without fetching dataclinicaltrials_get_field_valuesDiscover valid values for API fields, with per-value study countsclinicaltrials_get_field_definitionsResolve valid field names — keyword search, path drill-down, or top-level overviewclinicaltrials_get_study_resultsFetch posted results — outcomes, adverse events, participant flow, baseline — for completed studiesclinicaltrials_find_eligibleMatch patient demographics and conditions to candidate recruiting trials, without checking inclusion/exclusion criteriacreate_entitiesCreate multiple new entities in the knowledge graphcreate_relationsCreate multiple new relations between entities in the knowledge graph. Relations should be in active voiceadd_observationsAdd new observations to existing entities in the knowledge graphdelete_entitiesDelete multiple entities and their associated relations from the knowledge graphdelete_observationsDelete specific observations from entities in the knowledge graphdelete_relationsDelete multiple relations from the knowledge graphread_graphRead the entire knowledge graphsearch_nodesSearch for nodes in the knowledge graph based on a queryopen_nodesOpen specific nodes in the knowledge graph by their namesPaste either block (or both) into your client config, e.g. claude_desktop_config.json or ~/.cursor/mcp.json. We only show a config when the install command is confirmed.
{
"mcpServers": {
"clinicaltrialsgov-mcp-server": {
"command": "bunx",
"args": [
"clinicaltrialsgov-mcp-server@latest"
]
}
}
}
{
"mcpServers": {
"git": {
"command": "npx",
"args": [
"-y",
"@modelcontextprotocol/server-memory"
]
}
}
}
