STRING Database MCP Server vs MCP Server Mysql

In-depth architectural comparison of the STRING Database MCP Server and MCP Server Mysql MCP servers. Compare execution transports, security boundaries, tool capabilities, quality scores, and ready-to-paste client installation snippets for Claude, Cursor, Windsurf, and VS Code.

Which MCP Server Should You Choose?

S

Choose STRING Database MCP Server when:

• You need dedicated capabilities in the Databases domain.
• You prefer remote streaming HTTP/SSE transport architecture.
• Your security boundary fits: No auth required (Free / Open Source).

Explore STRING Database MCP Server Details

Choose MCP Server Mysql when:

• You need dedicated capabilities in the Databases domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: other (Free / Open Source).
• You have access to required keys: MYSQL_HOST, MYSQL_PORT, MYSQL_USER, MYSQL_PASS, MYSQL_DB.
• Primary tools included: Read-only SQL access by default, Schema and column metadata resource, Opt-in insert, update, and delete permissions.

Explore MCP Server Mysql Details

Feature & Specification Comparison

Specification	S STRING Database MCP Server Databases	MCP Server Mysql benborla29 Databases
Summary	Query STRING interactions, enrichment, annotations, homology, and PPI networks.	MySQL database integration in NodeJS with configurable access controls and schema inspection
Category & Scope	Databases	Databases

Tools & Capabilities Breakdown

Ready-to-Paste Client Configurations

Paste either (or both) of these JSON server blocks into your client config file (e.g. claude_desktop_config.json or ~/.cursor/mcp.json).

{
  "mcpServers": {
    "string-database-mcp-server": {
      "url": "https://string-db.org"
    }
  }
}

{
  "mcpServers": {
    "benborla29-mcp-server-mysql": {
      "command": "npx",
      "args": [
        "-y",
        "@benborla29/mcp-server-mysql"
      ],
      "env": {
        "MYSQL_HOST": "YOUR_MYSQL_HOST_HERE",
        "MYSQL_PORT": "YOUR_MYSQL_PORT_HERE",
        "MYSQL_USER": "YOUR_MYSQL_USER_HERE",
        "MYSQL_PASS": "YOUR_MYSQL_PASS_HERE",
        "MYSQL_DB": "YOUR_MYSQL_DB_HERE"
      }
    }
  }
}

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