Repository Intelligence vs Flyto Indexer

In-depth architectural comparison of the Repository Intelligence and Flyto Indexer MCP servers. Compare execution transports, security boundaries, tool capabilities, quality scores, and ready-to-paste client installation snippets for Claude, Cursor, Windsurf, and VS Code.

Which MCP Server Should You Choose?

Choose Repository Intelligence when:

• You need dedicated capabilities in the Developer Tools domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: No auth required (Free / Open Source).

Explore Repository Intelligence Details

Choose Flyto Indexer when:

• You need dedicated capabilities in the Developer Tools domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: No auth required (Free / Open Source).

Explore Flyto Indexer Details

Feature & Specification Comparison

Specification	Repository Intelligence Developer Tools	Flyto Indexer Developer Tools
Summary	Analyze repos of any size - security scanning code analysis monorepo support	Code intelligence MCP server: impact analysis, dependency graphs, dead code detection.
Category & Scope	Developer Tools	Developer Tools

Tools & Capabilities Breakdown

Ready-to-Paste Client Configurations

Paste either (or both) of these JSON server blocks into your client config file (e.g. claude_desktop_config.json or ~/.cursor/mcp.json).

{
  "mcpServers": {
    "repository-intelligence": {
      "command": "npx",
      "args": [
        "-y",
        "lyra-intel-mcp"
      ]
    }
  }
}

{
  "mcpServers": {
    "flyto-indexer": {
      "command": "uvx",
      "args": [
        "flyto-indexer"
      ]
    }
  }
}

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