What is the key difference between Open Brain and Github Enterprise MCP?

Open Brain belongs to the Version Control category with cloud HTTP/SSE execution, while Github Enterprise MCP belongs to the Version Control category with local stdio execution.

How do I install Open Brain or Github Enterprise MCP in Claude Desktop or Cursor?

Copy the mcpServers JSON configuration snippet provided on this page into your claude_desktop_config.json or ~/.cursor/mcp.json file and restart your AI client.

Are Open Brain and Github Enterprise MCP free or paid?

Open Brain operates under a Free / Open Source model (No auth required). Github Enterprise MCP operates under a Free / Open Source model (API Key required).

Which MCP server has more tools and community activity?

Open Brain lists 16 tools with 2 views and 8 GitHub stars. Github Enterprise MCP lists 20 tools with 4 views and 29 GitHub stars.

Can I use both Open Brain and Github Enterprise MCP together in the same MCP host?

Yes! MCP hosts like Claude Desktop, Cursor, Windsurf, Cline, and VS Code support configuring multiple servers under the mcpServers object simultaneously.

Side-by-Side Model Context Protocol Comparison

Open Brain vs Github Enterprise MCP

In-depth architectural comparison of the Open Brain and Github Enterprise MCP MCP servers. Compare execution transports, security boundaries, tool capabilities, quality scores, and ready-to-paste client installation snippets for Claude, Cursor, Windsurf, and VS Code.

At a Glance & Executive Verdict

Open Brain

Version Control · Remote HTTP/SSE

Quality: 51/100 (Good) | Auth: No auth required

Github Enterprise MCP

Version Control · Local stdio

Quality: 53/100 (Good) | Auth: API Key required

Verdict Summary: Choose Open Brain if you need specialized Version Control tools running via a hosted cloud SSE transport. Choose Github Enterprise MCP if your workspace requires Version Control integration with local subprocess execution. Both servers can be configured concurrently in your client's mcpServers manifest.

Which MCP Server Should You Choose?

Choose Open Brain when:

You need dedicated capabilities in the Version Control domain.
You prefer remote streaming HTTP/SSE transport architecture.
Your security boundary fits: No auth required (Free / Open Source).
Primary tools included: search_thoughts, list_thoughts, thought_stats.

Explore Open Brain Details

Choose Github Enterprise MCP when:

You need dedicated capabilities in the Version Control domain.
You prefer local stdio subprocess transport architecture.
Your security boundary fits: API Key required (Free / Open Source).
You have access to required keys: GITHUB_TOKEN, GITHUB_ENTERPRISE_URL.
Primary tools included: list-repositories, get-repository, list-branches.

Explore Github Enterprise MCP Details

Feature & Specification Comparison

Specification	Open Brain Version Control	Github Enterprise MCP ddukbg Version Control
Summary	Personal knowledge graph with 16 MCP tools. Auto-links, deduplicates, tracks themes, synthesizes.	MCP server for GitHub Enterprise API integration
Category & Scope	Version Control	Version Control

Tools & Capabilities Breakdown

Open Brain Tools (16)

search_thoughts

Semantic search with optional graph expansion (1-hop traversal)

list_thoughts

Browse thoughts filtered by type, topic, person, theme, quality, time

thought_stats

Aggregate statistics: counts, type/theme breakdown, top topics/people

capture_thought

Save a new thought from any AI client (with auto-embedding)

get_connections

Graph traversal from a thought (typed links: extends, contradicts, etc.)

list_entities

Browse extracted entities (people, tools, projects, orgs) by frequency

Ready-to-Paste Client Configurations

Paste either (or both) of these JSON server blocks into your client config file (e.g. claude_desktop_config.json or ~/.cursor/mcp.json).

Open Brain Configuration

mcpServers (Claude Desktop / Cursor)

{
  "mcpServers": {
    "open-brain": {
      "url": "https://YOUR_REF.supabase.co/functions/v1/open-brain-mcp/mcp"
    }
  }
}

Github Enterprise MCP Configuration

mcpServers (Claude Desktop / Cursor)

{
  "mcpServers": {
    "ddukbg-github-enterprise-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@ddukbg/github-enterprise-mcp"
      ],
      "env": {
        "GITHUB_TOKEN": "YOUR_GITHUB_TOKEN_HERE",
        "GITHUB_ENTERPRISE_URL": "YOUR_GITHUB_ENTERPRISE_URL_HERE"
      }
    }
  }
}

Frequently Asked Questions

Open Brain is categorized under Version Control and uses a remote streaming HTTP/SSE transport. In contrast, Github Enterprise MCP belongs to Version Control using local stdio subprocess. Select Open Brain when you need capabilities focused on version control and Github Enterprise MCP when you require tools for version control.

More alternatives to Open Brain More alternatives to Github Enterprise MCP Version Control category hub Canonical compare URL