notes-vault-mcp

An MCP server for a vault of markdown notes — the kind Obsidian keeps: a folder of .md files with YAML frontmatter. The vault lives either in a local directory or in an S3 bucket (MinIO included), and the server gives an agent a cheap, indexed way to read and write it.

The point is that an agent should be able to answer "what do we already know about this?" in one call, and should be told when the vault has drifted away from the code. So the server does more than read and write files:

• A local SQLite index. Every tool call refreshes it, fetching only the notes whose version changed. Search never downloads the vault.
• Full-text search with BM25 ranking, folder weights, recency decay and a status factor, so the living system note outranks a two-year-old archived plan on the same words.
• A schema. The frontmatter contract lives in the vault as .vault/schema.yml: which folders exist and what each is for, which fields are required, which statuses and kinds are legal, which folders must link an area. Writes are validated against it and refused when they do not hold.
• A lifecycle. close archives a finished note and stamps its status; log_append writes one dated line per repo per session; lint reports every kind of drift it can see.
• Session hooks for Claude Code: session-start hands the agent the system notes for the repo it is about to touch — plus the commits made since each note was last updated — and stop refuses to end a session that left commits unlogged or notes stale.

Swedish or English notes both work: the index folds diacritics, and the schema carries a synonym list so bokning finds booking.

Install

As a Claude Code plugin

claude plugin marketplace add https://github.com/gronare/claude-plugins
claude plugin install vault@gronare

The plugin asks for the vault settings and passes them as CLAUDE_PLUGIN_OPTION_* environment variables, which this server reads as if they were the bare names.

As an MCP server, straight from PyPI

claude mcp add vault -s user \
  -e VAULT_PATH=$HOME/vault \
  -- uvx notes-vault-mcp

Or against S3 / MinIO:

claude mcp add vault -s user \
  -e S3_ENDPOINT=https://minio.example.com \
  -e S3_ACCESS_KEY=... \
  -e S3_SECRET_KEY=... \
  -e S3_BUCKET=vault \
  -- uvx notes-vault-mcp

As a container

claude mcp add vault -s user -- \
  docker run --rm -i \
  -e S3_ENDPOINT -e S3_ACCESS_KEY -e S3_SECRET_KEY -e S3_BUCKET \
  ghcr.io/gronare/notes-vault-mcp:latest

Configuration

Every variable is also read from CLAUDE_PLUGIN_OPTION_<NAME>, which is how the Claude Code plugin passes its user config. The bare name wins when both are set.

Set VAULT_PATH or the four S3_* variables. With neither, the server exits with one line saying so.

First run

uvx notes-vault-mcp init

init writes into the vault, and refuses to overwrite anything without --force:

• .vault/schema.yml — the frontmatter contract, copied from the built-in default so you can edit it.
• Areas.base, Open tasks.base, Resources.base — Obsidian Bases views over the same structure.

It then prints a CLAUDE.md snippet to stdout: the workflow rules an agent needs on its side of the conversation.

The schema

.vault/schema.yml is deep-merged over the built-in default, so it only needs to carry what differs. The default lays out five folders:

and the contract for a note:

frontmatter:
  required: [title, date, updated, tags, status]
  optional: [kind, area, summary, path, superseded_by]
  area_required_in: [Projects, Resources, Log]
  status_values: [draft, active, complete, superseded]
  kind_values: [system, task, trap, howto, decision, reference, log]

path is what ties a note to code: a comma-separated list of directories (~ is kept as written and also indexed expanded). That is what context and the session hook match against.

The repo log is one note per repo, and both its filename and its line format are schema settings:

log:
  folder: Log
  file_format: "{repo}-log.md"
  entry_format: "- [{date}] {line} | commits: {commits} | {area}"

file_format takes a single {repo} placeholder, and the default suffix is what keeps the log clear of the hub note: with Areas/greenhouse.md and Log/greenhouse.md both in the vault, Obsidian cannot resolve [[greenhouse]]. Every place that builds the log path reads this setting — log_append, the log tail in context, the stop hook's unlogged-commit check, changelog and lint — so changing it moves all of them at once. Rename the existing files to match when you change it.

Also configurable: the tag vocabulary and whether it is enforced, the synonym groups search expands, stale_after_days, and the search weights.

Tools

Every call refreshes the index first, throttled to at most once every 20 seconds.

search filters: folder, status, tag, kind, area, path_prefix, since, include_archive, include_superseded, limit.

What lint reports

broken_frontmatter, missing_required (per field), missing_area, unknown_tags (only when the vocabulary is strict), unresolved_links, orphans (no inbound wikilink; log and archive ignored), stale_active, archive_status_mismatch, duplicate_stems, superseded_target_missing.

uvx notes-vault-mcp lint
uvx notes-vault-mcp lint --write "Log/lint-$(date +%F).md"

Hooks

Two Claude Code hooks, both reading the hook JSON on stdin and both exiting 0 whatever happens.

session-start prints the context bundle for the working directory, then — for each system note it returned — the commits touching that note's path since the note was last updated. That is the answer to "is this note still true?" before the agent believes it.

stop blocks the end of a session that left work unrecorded: commits from the last 24 hours whose sha does not appear in the repo log, and open task notes older than 14 days. It returns {"decision": "block", "reason": ...}, or nothing at all when the vault is up to date. Set VAULT_STOP_HOOK=off to silence it.

{
  "hooks": {
    "SessionStart": [
      { "hooks": [{ "type": "command", "command": "uvx notes-vault-mcp hook session-start" }] }
    ],
    "Stop": [
      { "hooks": [{ "type": "command", "command": "uvx notes-vault-mcp hook stop" }] }
    ]
  }
}

Other commands

notes-vault-mcp serve --transport stdio          # the default
notes-vault-mcp sync --rebuild                   # drop the index and read every note again
notes-vault-mcp search "bokning" --limit 5       # the same ranking, from a shell
notes-vault-mcp changelog greenhouse 2026-08 --repo-path ~/projects/greenhouse
notes-vault-mcp changelog greenhouse 2026-08 --repo-path ~/projects/greenhouse --write
notes-vault-mcp changelog --all                  # this month (and last month during its first week)