Mysql vs Mongodb MCP Server

A side-by-side look at the Mysql and Mongodb MCP Server MCP servers: transport, auth, tools, quality signals, and the config to install either one in Claude, Cursor, Windsurf or VS Code.

Mysql logoMysqlDatabasesMCP server for MySQL/MariaDB — pooled async queries with destructive-query safety45FairAuth: not declaredMongodb MCP Server logoMongodb MCP ServerDatabases · Local subprocess (stdio)A Model Context Protocol server to connect to MongoDB databases and MongoDB Atlas Clusters.67GreatAuth: other

Verdict: choose Mysql for databases work; choose Mongodb MCP Server for databases as a local process. You can also run both side by side in one mcpServers block.

Which MCP server should you choose?

Mysql logoChoose Mysql when

  • You need dedicated capabilities in the Databases domain.
  • You want tools like table_name, query, database.
Explore Mysql

Mongodb MCP Server logoChoose Mongodb MCP Server when

  • You need dedicated capabilities in the Databases domain.
  • You prefer a local stdio subprocess transport.
  • Its auth model fits you: other.
  • You have the keys it needs: MDB_MCP_CONNECTION_STRING.
  • You want tools like aggregate, aggregate-db, collection-indexes.
Explore Mongodb MCP Server

Feature & specification comparison

Rows where the two servers differ are marked.

SpecMysql logoMysqlMongodb MCP Server logoMongodb MCP Server
CategoryDatabasesDatabases
Quality signal45/100 · Fair67/100 · Great
Install commandNot confirmed yetConfirmed
Transport—Local subprocess (stdio)
AuthNot declaredother
PricingNot declaredFree
Required env varsNone listedMDB_MCP_CONNECTION_STRING
Verified ownerCommunity listingCommunity listing
GitHub stars11,151
Directory activity 1 views 0 installs 0 upvotes 1 views 0 installs 0 upvotes
Tools553

Tools & capabilities

Mysql tools 5

  • table_name
  • query
  • database
  • data
  • conditions

Mongodb MCP Server tools 53

  • aggregateRun an aggregation against a MongoDB collection
  • aggregate-dbRun an aggregation against a MongoDB database
  • collection-indexesDescribe the indexes for a collection
  • collection-schemaDescribe the schema for a collection
  • collection-storage-sizeGets the size of the collection
  • connectConnect to a MongoDB instance
  • countGets the number of documents in a MongoDB collection using db.collection.count() and query as an optional filter parameter
  • create-collectionCreates a new collection in a database. If the database doesn't exist, it will be created automatically.
  • create-indexCreate an index for a collection
  • db-statsReturns statistics that reflect the use state of a single database
  • delete-manyRemoves all documents that match the filter from a MongoDB collection
  • disconnectClose a MongoDB connection and revoke its connectionId.
  • +41 more on the listing page

Ready-to-paste client configs

Paste either block (or both) into your client config, e.g. claude_desktop_config.json or ~/.cursor/mcp.json. We only show a config when the install command is confirmed.

Mysql

No confirmed install command for Mysql yet — follow the setup steps linked from its listing page rather than a guessed package name.

Mongodb MCP Server

mcpServers (Claude Desktop / Cursor)
{
  "mcpServers": {
    "mongodb-mcp-server": {
      "command": "npx",
      "args": [
        "-y",
        "mongodb-mcp-server@latest"
      ],
      "env": {
        "MDB_MCP_CONNECTION_STRING": "YOUR_MDB_MCP_CONNECTION_STRING_HERE"
      }
    }
  }
}

Frequently asked questions

Mysql is categorized under Databases and uses an install path we have not confirmed yet. Mongodb MCP Server belongs to Databases and uses a local stdio subprocess. Pick Mysql for databases work and Mongodb MCP Server for databases.

Copy the mcpServers block from the config section on this page into your client's config (for example claude_desktop_config.json or ~/.cursor/mcp.json), then fully restart the client. Mysql has no confirmed install command yet — follow its own setup instructions.

Mysql has no declared pricing — check the project's own site. Mongodb MCP Server is listed as free. Auth: other. If a server needs environment variables such as API keys, define them under the env key in your client's MCP config.

Yes. MCP clients support multiple servers: add mysql and mongodb-mcp-server as separate keys in the same mcpServers object, and your assistant will call tools from either one.

On AllMCPs, Mysql has a quality signal of 45/100 (Fair) with 1 views, 0 installs and 1 GitHub stars. Mongodb MCP Server has 67/100 (Great) with 1 views, 0 installs and 1,151 GitHub stars.