Atomgit MCP Server vs Github Enterprise MCP

In-depth architectural comparison of the Atomgit MCP Server and Github Enterprise MCP MCP servers. Compare execution transports, security boundaries, tool capabilities, quality scores, and ready-to-paste client installation snippets for Claude, Cursor, Windsurf, and VS Code.

Which MCP Server Should You Choose?

Choose Atomgit MCP Server when:

• You need dedicated capabilities in the Version Control domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: API Key required (Free / Open Source).
• You have access to required keys: ATOMGIT_PERSONAL_ACCESS_TOKEN.
• Primary tools included: Fetch user and organization repositories, Create, list, and comment on issues, Create and comment on pull requests.

Explore Atomgit MCP Server Details

Choose Github Enterprise MCP when:

• You need dedicated capabilities in the Version Control domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: API Key required (Free / Open Source).
• You have access to required keys: .

Feature & Specification Comparison

Specification	Atomgit MCP Server kaiyuanxiaobing Version Control	Github Enterprise MCP ddukbg Version Control
Summary	Official AtomGit server for integration with repository management, PRs, issues, branches, labels, and more.	MCP server for GitHub Enterprise API integration
Category & Scope	Version Control

Tools & Capabilities Breakdown

Ready-to-Paste Client Configurations

Paste either (or both) of these JSON server blocks into your client config file (e.g. claude_desktop_config.json or ~/.cursor/mcp.json).

{
  "mcpServers": {
    "kaiyuanxiaobing-atomgit-mcp-server": {
      "command": "npx",
      "args": [
        "-y",
        "kaiyuanxiaobing-atomgit-mcp-server"
      ],
      "env": {
        "ATOMGIT_PERSONAL_ACCESS_TOKEN": "YOUR_ATOMGIT_PERSONAL_ACCESS_TOKEN_HERE"
      }
    }
  }
}

{
  "mcpServers": {
    "ddukbg-github-enterprise-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@ddukbg/github-enterprise-mcp"
      ],
      "env": {
        "GITHUB_TOKEN": "YOUR_GITHUB_TOKEN_HERE",
        "GITHUB_ENTERPRISE_URL": "YOUR_GITHUB_ENTERPRISE_URL_HERE"
      }
    }
  }
}

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