What is the best alternative to Gprofiler?

The top-rated alternatives to Gprofiler in the Developer Tools category include Openapi MCP Server, Claude Task Master, MCP Server Docker. These servers offer complementary or alternative capabilities depending on your deployment stack and authentication requirements.

How do Gprofiler alternatives differ in installation and runtime?

Gprofiler and its alternatives vary by runtime requirement (Node.js/npx, Python/uvx, Docker, or remote HTTP/SSE endpoints). Check the specification comparison table above to verify command requirements before installing.

Are alternatives to Gprofiler free and open source?

Most MCP servers listed on AllMCPs are open source tools under MIT or Apache licenses that you can self-host or run locally with Claude Desktop, Cursor, VS Code, or Windsurf.

How do I side-by-side compare Gprofiler with a specific alternative?

Click the "Compare side-by-side →" button on any alternative card to see an in-depth comparison matrix covering feature lists, stars, npm downloads, install configurations, and schema specifications.

Developer Tools• MCP Alternatives Guide

Best Alternatives to Gprofiler

Looking for an alternative to Gprofiler? Whether you need a different runtime environment, custom authentication support, or alternative API integrations in the Developer Tools ecosystem, we have cataloged and compared the top alternative MCP servers below.

Browse all Developer Tools servers →View Gprofiler Specs →

Target Reference Server

Gprofiler Overview

g:Profiler (University of Tartu) — functional enrichment analysis for a gene list against GO…

Specification Matrix: Gprofiler vs Alternatives

Server Name	Runtime	Auth	Pricing	GitHub Stars	Downloads	Action
G Gprofiler (Target)	—	Free/None	Free	—	—	Current
O Openapi MCP Server	Remote (SSE)	No auth required	Free	904	—	Compare →
C Claude Task Master	npx	API key	Bring your own API key (usage-based cost)	28,086	—	Compare →
M MCP Server Docker	uvx	No auth required	Free	744	—	Compare →
A Andrea9293 MCP	npx	No auth required	Free	344	—	Compare →
D Docker MCP	uvx	No auth required	Free	503	—	Compare →
N Next Devtools MCP	npx	No auth required	Free	824	—	Compare →
U UI5 MCP Server	npx	No auth required	Free	100	—	Compare →
E Exogram Authority Runtime	npx	Free/None	Free	—	—	Compare →
M MCP Graphql	npx	No auth required	Free	408	—	Compare →
T ToughTongue AI	npx	Free/None	Free	7	—	Compare →
A APIANT.AI	—	Free/None	Freemium	—	—	Compare →
M Markdown Formatter	npx	No auth required	Free	2	—	Compare →

Detailed Evaluation of Gprofiler Alternatives

Openapi MCP Server

Runtime: Remote (SSE)

Explore OpenAPI v3 specifications, summarize APIs, and inspect the endpoints needed for a task through MCP.

Key Features:

OpenAPI specification discovery

Plain-language API summaries

Operation-level endpoint details

3 0 904

Compare side-by-side

Claude Task Master

Runtime: npx

Parses PRDs into structured tasks, expands implementation steps, and manages AI development work across multiple model providers.

Key Features:

PRD parsing

Task expansion

Task dependencies

8 0 28,086

Compare side-by-side

MCP Server Docker

Runtime: uvx

Manage Docker containers, images, networks, and volumes through MCP tools, prompts, and resource templates.

Key Features:

Natural-language container composition prompt

Container lifecycle management

Image build, pull, push, and removal

3 0 744

Compare side-by-side

Andrea9293 MCP

Runtime: npx

Local document storage, uploads, hybrid search, context retrieval, and optional Gemini analysis for coding agents.

Key Features:

Local Orama document and vector storage

Hybrid full-text and semantic search

Parent-child document chunking

2 0 344

Compare side-by-side

Docker MCP

Runtime: uvx

Manage Docker containers, compose stacks, logs, and status through MCP tools.

Key Features:

Create standalone containers

Deploy Docker Compose stacks

Retrieve container logs

3 0 503

Compare side-by-side

Next Devtools MCP

Runtime: npx

Verified

Connects coding agents to running Next.js 16+ dev servers for runtime errors, routes, logs, docs, and browser automation guidance.

Key Features:

Discovers running Next.js development servers

Proxies runtime errors, routes, logs, and metadata

Resolves Server Action IDs to source files

6 0 824

Compare side-by-side

UI5 MCP Server

Runtime: npx

UI5 development tools for scaffolding apps, consulting guidance, inspecting projects, and validating UI5 code.

Key Features:

UI5 application scaffolding

UI Integration Card scaffolding

UI5 API and development guidance

2 0 100

Compare side-by-side

Exogram Authority Runtime

Runtime: npx

Model Context Protocol server for the Exogram Authority Runtime.

2 0

Compare side-by-side

MCP Graphql

Runtime: npx

Connects MCP clients to GraphQL endpoints for schema discovery and query execution, with mutations disabled by default.

Key Features:

GraphQL schema introspection

GraphQL query execution

Schema resource exposure

3 0 408

Compare side-by-side

ToughTongue AI

Runtime: npx

Create voice-agent scenarios, pull session analytics, place SIP calls, schedule meeting bots.

2 0 7

Compare side-by-side

APIANT.AI

Runtime not confirmed

Verified

An AI integration engineer that builds, tests, monitors, and improves integrations, helping teams create robust solutions instead of workarounds.

9 0

Compare side-by-side

Markdown Formatter

Runtime: npx

Converts Markdown into office, web, data, platform, and analysis outputs through MCP tools.

Key Features:

Convert Markdown to office, web, data, and markup formats

Batch-convert multiple documents and formats

Repair and lint Markdown syntax

3 0 2

Compare side-by-side

Best Alternatives to Gprofiler

Gprofiler Overview

Specification Matrix: Gprofiler vs Alternatives

Detailed Evaluation of Gprofiler Alternatives

Frequently Asked Questions: Gprofiler Alternatives