Agentmako vs Obsidian Semantic Search

In-depth architectural comparison of the Agentmako and Obsidian Semantic Search MCP servers. Compare execution transports, security boundaries, tool capabilities, quality scores, and ready-to-paste client installation snippets for Claude, Cursor, Windsurf, and VS Code.

Which MCP Server Should You Choose?

Choose Agentmako when:

• You need dedicated capabilities in the Databases domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: No auth required (Free / Open Source).
• You have access to required keys: AGENTMAKO_DB_PATH, AGENTMAKO_LOG_LEVEL.
• Primary tools included: Local SQLite-backed indexing of code, schema, and diagnostics, MCP server exposing tools like reef_ask, reef_status, reef_verify, and reef_impact, Support for Postgres/Supabase schema snapshots and read-only inspection.

Explore Agentmako Details

O

Choose Obsidian Semantic Search when:

• You need dedicated capabilities in the Databases domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: No auth required (Free / Open Source).
• Primary tools included: index_status, index_vault, search_notes.

Feature & Specification Comparison

Specification	Agentmako drhalto Databases	O Obsidian Semantic Search Databases
Summary	Local-first codebase intelligence engine. Gives coding agents structured context packets, indexed code/schema facts, and diagnostics over MCP, backed by a local SQLite store — so agents stop rediscovering your repo with raw grep. Optional Postgres/Supabase awareness and a bundled Claude Code plugin.	Read-only semantic search MCP server for Obsidian vaults using local Ollama embeddings.
Category & Scope	Databases

Tools & Capabilities Breakdown

Ready-to-Paste Client Configurations

Paste either (or both) of these JSON server blocks into your client config file (e.g. claude_desktop_config.json or ~/.cursor/mcp.json).

{
  "mcpServers": {
    "drhalto-agentmako": {
      "command": "npx",
      "args": [
        "-y",
        "agentmako"
      ],
      "env": {
        "AGENTMAKO_DB_PATH": "YOUR_AGENTMAKO_DB_PATH_HERE",
        "AGENTMAKO_LOG_LEVEL": "YOUR_AGENTMAKO_LOG_LEVEL_HERE"
      }
    }
  }
}

{
  "mcpServers": {
    "obsidian-semantic-search": {
      "command": "npx",
      "args": [
        "-y",
        "--package"
      ]
    }
  }
}

Related MCP Server Comparisons