Codebase Memory MCP vs Mnemostack

In-depth architectural comparison of the Codebase Memory MCP and Mnemostack MCP servers. Compare execution transports, security boundaries, tool capabilities, quality scores, and ready-to-paste client installation snippets for Claude, Cursor, Windsurf, and VS Code.

Which MCP Server Should You Choose?

Choose Codebase Memory MCP when:

• You need dedicated capabilities in the Knowledge & Memory domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: No auth required (Free / Open Source).
• Primary tools included: index_repository, search_graph, query_graph.

Explore Codebase Memory MCP Details

Choose Mnemostack when:

• You need dedicated capabilities in the Knowledge & Memory domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: API Key required (BYOK (Pay Provider Direct)).
• You have access to required keys: GEMINI_API_KEY.
• Primary tools included: Hybrid vector, BM25, temporal, and graph retrieval, Reciprocal rank fusion with multi-stage reranking, Qdrant-backed persistent storage.

Feature & Specification Comparison

Specification	Codebase Memory MCP DeusData Knowledge & Memory	Mnemostack udjin-labs Knowledge & Memory
Summary	Code-intelligence engine that indexes a repo into a persistent knowledge graph — functions, classes, call chains, HTTP routes, cross-service links. 159 languages via tree-sitter + Hybrid LSP, sub-ms structural queries, 99% fewer tokens than grep. Single static binary, zero dependencies, 100% local. npx codebase-memory-mcp	Durable hybrid memory for AI agents. Combines vector search, BM25, temporal retrieval, and optional Memgraph knowledge graph via reciprocal rank fusion. 6 MCP tools: health, search, answer, feedback, graphquery, graphaddtriple. Self-hosted with Qdrant backend. 82.5% strict accuracy on LoCoMo benchmark. pip install 'mnemostack[mcp]'

Tools & Capabilities Breakdown

Ready-to-Paste Client Configurations

Paste either (or both) of these JSON server blocks into your client config file (e.g. claude_desktop_config.json or ~/.cursor/mcp.json).

{
  "mcpServers": {
    "deusdata-codebase-memory-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "codebase-memory-mcp"
      ]
    }
  }
}

{
  "mcpServers": {
    "udjin-labs-mnemostack": {
      "command": "uvx",
      "args": [
        "mnemostack"
      ],
      "env": {
        "GEMINI_API_KEY": "YOUR_GEMINI_API_KEY_HERE"
      }
    }
  }
}

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