MCP Server Mysql vs Gnomad

In-depth architectural comparison of the MCP Server Mysql and Gnomad MCP servers. Compare execution transports, security boundaries, tool capabilities, quality scores, and ready-to-paste client installation snippets for Claude, Cursor, Windsurf, and VS Code.

Which MCP Server Should You Choose?

Choose MCP Server Mysql when:

• You need dedicated capabilities in the Databases domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: other (Free / Open Source).
• You have access to required keys: MYSQL_HOST, MYSQL_PORT, MYSQL_USER, MYSQL_PASS, MYSQL_DB.
• Primary tools included: Read-only SQL access by default, Schema and column metadata resource, Opt-in insert, update, and delete permissions.

Explore MCP Server Mysql Details

Choose Gnomad when:

• You need dedicated capabilities in the Databases domain.
• You prefer local stdio subprocess transport architecture.
• Your security boundary fits: No auth required (Free / Open Source).

Explore Gnomad Details

Feature & Specification Comparison

Specification	MCP Server Mysql benborla29 Databases	Gnomad Databases
Summary	MySQL database integration in NodeJS with configurable access controls and schema inspection	Broad Institute gnomAD genomic variant database (GraphQL)
Category & Scope	Databases	Databases

Tools & Capabilities Breakdown

Ready-to-Paste Client Configurations

Paste either (or both) of these JSON server blocks into your client config file (e.g. claude_desktop_config.json or ~/.cursor/mcp.json).

{
  "mcpServers": {
    "benborla29-mcp-server-mysql": {
      "command": "npx",
      "args": [
        "-y",
        "@benborla29/mcp-server-mysql"
      ],
      "env": {
        "MYSQL_HOST": "YOUR_MYSQL_HOST_HERE",
        "MYSQL_PORT": "YOUR_MYSQL_PORT_HERE",
        "MYSQL_USER": "YOUR_MYSQL_USER_HERE",
        "MYSQL_PASS": "YOUR_MYSQL_PASS_HERE",
        "MYSQL_DB": "YOUR_MYSQL_DB_HERE"
      }
    }
  }
}

{
  "mcpServers": {
    "gnomad": {
      "command": "npx",
      "args": [
        "-y",
        "gnomad"
      ]
    }
  }
}

Related MCP Server Comparisons