Automated AI research toolkit: hypothesis generation, experiments, and paper writing
Copy the AI prompt to install this server into Claude Code, Cursor, or another agent β or use 1-click editor setup below.
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π‘ Paste the JSON block into your client's configuration file under mcpServers, then restart the application.
Inspect callable tools, capabilities, and parameters exposed to AI agents by AIRAS.
generate_research_queriesCallable MCP tool function
search_papersCallable MCP tool function
fetch_paper_fulltextCallable MCP tool function
retrieve_papersCallable MCP tool function
generate_hypothesisCallable MCP tool function
generate_experimental_designCallable MCP tool function

AIRAS is open-source software for automated research. It gives a coding agent (Claude Code, Cursor, or any MCP client) everything it needs to take a research topic through literature survey, hypothesis, experiments, and a finished paper, and it makes the paper's claims verifiable: the paper is preregistered in git before any experiment runs, every reported number is realized from run outputs, and CI re-checks all of it before the PDF of record is produced.
AIRAS ships as one PyPI package (airas) that provides:
auto-research workflow skills,airas verify-record, airas verify-paper) that the experiment repository's CI uses as the verification gate.Currently, it focuses on the automation of machine learning research.
No clone, no Docker. Only uv is required; uvx fetches the package on first run.
AIRAS is meant to be driven from Claude Code through its plugin. The plugin installs the MCP server together with the auto-research workflow skills and the hooks that record the agent's state:
The MCP server can also be used on its own, without the skills and hooks. In Claude Code:
In any other MCP client, add it to the client's MCP configuration (e.g. .mcp.json):
Upgrading. uvx keeps the version it fetched the first time, so an existing install does not move to a new release on its own. Run uv cache clean airas (or uvx airas@latest) once to pick up the latest version.
Credentials live in ~/.airas/credentials.json and are re-read on every tool call, so you can create or edit the file at any time:
| Key | Purpose |
|---|---|
GH_PERSONAL_ACCESS_TOKEN | Required. Creates and drives the experiment repository (repo + workflow scopes, admin on the repository). |
SEYVAL_API_KEY (+ optional SEYVAL_COMPUTE_ID, SEYVAL_WORKSPACE_ID) | Needed for backend="seyval": running experiments on the Seyval compute platform and cross-checking their provenance. See Execution platforms. |
OPENAI_API_KEY / ANTHROPIC_API_KEY / GEMINI_API_KEY / OPENROUTER_API_KEY / AWS_BEARER_TOKEN_BEDROCK / VERCEL_AI_GATEWAY_API_KEY | Not needed for the flow: the agent driving AIRAS authors every artifact itself, guided by the skills, and get_prompts provides the authoring guidance for a step when you write it yourself. A key is only used when you call the backend-LLM tools (analyze_experiment, verify_paper_values with a model) directly. |
In Claude Code, invoke the orchestrator skill and give it a topic:
It walks through the flow below, asking you to settle the operational choices (repository visibility, execution platform, compute target) once up front. Other MCP clients call the tools directly; each tool's description says what comes before and after it, and the MCP documentation walks the flow.
auto-research owns only the ordering and the rules that span steps. Each step is its own skill with a stated contract, so you can also invoke a single step on an existing repository.
| Step | Skill | What it leaves in the repository |
|---|---|---|
| 1 | setup-repository | An experiment repository created from airas-template, cloned, with Actions secrets provisioned and main protected. All research state lives here from now on. |
| 2 | search-papers | Papers found across sources, including airas-papers-db, and their full text downloaded for the next step to read. |
| 3 | hypothesize-and-design | A falsifiable hypothesis and an experimental design that fixes run ids, metrics, models, datasets, and the compute environment. |
| 4 | preregister-paper | The full paper, written before any experiment, as numbered claims with criteria and predicted intervals. Its commit is the freeze point; .research/record.json is created here. |
| 5 | write-experiment-code | Experiment code against a fixed execution contract (Hydra entrypoint, sanity / pilot / full modes), environment fixed by lockfile and Dockerfile. Metrics are produced by airas-eval, not by the code itself. |
| 6 | run-experiments | Runs executed on the chosen backend (GitHub Actions or Seyval), outputs brought back under .research/results/ with provenance. See Execution platforms. |
| 7 | analyze-results | The analysis and verifiable figures (Vega-Lite charts, text-defined diagrams). |
| 8 | publish-paper | Every stated number realized from the record, compile and verification green locally, then pushed. CI re-runs the verification and commits paper.pdf to the protected branch: the paper of record. |
.research/record.json is an append-only tree of hypotheses, claims, designs, runs, and results. A reworded claim, a changed run condition, or a dropped result all fail the same check. A claim that misses its criterion is reported as a negative result, not rewritten.\airasval{...} references to a run's measured metric or declared parameter, rendered from the record. Anything else is marked \unverified{...}.Experiments run through the same three MCP tools on either backend: dispatch_experiment starts the run, get_experiment_run_status follows it, and import_run_outputs copies its outputs from where the backend keeps them (Seyval's storage, or the workflow's artifact on GitHub Actions) into .research/results/ with a provenance manifest. The record gate cross-checks the committed bytes against that same store, and once the store has dropped the run, against the sha256 hashes the import recorded. Seyval (bring-your-own Slurm compute) and GitHub Actions are supported; a backend for machines you run yourself (RunPod, a lab cluster) is not yet, since it needs a store the agent cannot rewrite.
The flow needs no LLM key: the agent authors the hypothesis, design, analysis and paper itself, guided by the skills. Backend-LLM tools (analyze_experiment, and verify_paper_values with a model) and get_prompts, which hands a client the prompts they use, exist for use outside the flow; the former need a provider key (get_available_llms lists the models your keys allow). Supported providers: OpenAI, Anthropic, Google Gemini, OpenRouter, Amazon Bedrock, and Vercel AI Gateway.
AIRAS relies on three sibling repositories under the airas-org organization. Each keeps one piece of the workflow outside the agent's reach.
| Repository | Role |
|---|---|
| airas-template | The template every experiment repository is created from. It ships the CI workflows, the execution contract, and the verification gate. |
| airas-papers-db | A curated database of papers from top conferences that the agent can search through search_papers, alongside OpenAlex, Semantic Scholar, and arXiv. |
| airas-eval | The evaluation logic, in one place. Metrics are computed by airas-eval from the run's evaluation inputs, not by the experiment code, so the agent cannot tamper with its own scores. |
The auto-research flow uses the following tools; the skills above are thin contracts over them. The server exposes more, but these are the ones a research project goes through.
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