# Opentreeoflife [Health: Active]

**Category:** 💻 Developer Tools  
**Repository:** https://github.com/pipeworx-io/mcp-opentreeoflife  
**GitHub Stars:** 0  
**Views:** 0  
**Installs:** 0  
**Upvotes:** 0  
**Directory Page:** https://allmcps.com/mcp/opentreeoflife

## Description
Open Tree of Life MCP.

## Tools
Capabilities this server exposes over MCP:

- **match_names** — Resolve scientific (Latin binomial) names to Open Tree of Life taxon IDs (ott_id). The ott_id is the key needed by taxon_info and common_ancestor — start here. Returns the best match per name with its ott_id, accepted name, rank, and synonym/approximate flags. Keyless.
- **taxon_info** — Get full details for an Open Tree of Life taxon by ott_id (from match_names) — accepted name, rank, unique name, synonyms, source taxonomy, and the complete ancestry lineage from this taxon up to the root of life. Keyless.
- **common_ancestor** — Find the most recent common ancestor (MRCA) of 2-10 taxa in the synthetic Tree of Life, by ott_id (from match_names). Returns the common-ancestor taxon (ott_id, name, rank). Keyless.

## Claude Desktop Quick Installation
Heuristic fallback — verify the package name and runner against the repository README before running it. Uses `npx` (confidence: low):

```json
"mcpServers": {
  "opentreeoflife": {
    "command": "npx",
    "args": ["-y","opentreeoflife"]
  }
}
```

## Documentation & README

# mcp-opentreeoflife

Open Tree of Life MCP.

Part of [Pipeworx](https://pipeworx.io) — an MCP gateway connecting AI agents to 1476+ live data sources.

## Tools

| Tool | Description |
|------|-------------|
| `match_names` | Resolve scientific (Latin binomial) names to Open Tree of Life taxon IDs (ott_id). The ott_id is the key needed by taxon_info and common_ancestor — start here. Returns the best match per name with its ott_id, accepted name, rank, and synonym/approximate flags. Keyless. |
| `taxon_info` | Get full details for an Open Tree of Life taxon by ott_id (from match_names) — accepted name, rank, unique name, synonyms, source taxonomy, and the complete ancestry lineage from this taxon up to the root of life. Keyless. |
| `common_ancestor` | Find the most recent common ancestor (MRCA) of 2-10 taxa in the synthetic Tree of Life, by ott_id (from match_names). Returns the common-ancestor taxon (ott_id, name, rank). Keyless. |

## Quick Start

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

```json
{
  "mcpServers": {
    "opentreeoflife": {
      "url": "https://gateway.pipeworx.io/opentreeoflife/mcp"
    }
  }
}
```

### What this endpoint actually serves

`tools/list` at `https://gateway.pipeworx.io/opentreeoflife/mcp` returns the tools in the table
above **plus the shared Pipeworx meta-tools** — `ask_pipeworx`,
`discover_tools`, `search_within`, `remember`/`recall` and the rest of the
gateway-wide set. So the tool count you see is larger than this table: a
single-pack endpoint currently lists roughly 30 shared tools alongside the
pack's own. The connection's `initialize` response states its exact scope, and
is the authoritative answer for a given day.

This is deliberate, not multiplexing by accident. The meta-tools are what let a
scoped connection answer a question this pack does not cover — via
`ask_pipeworx`, which routes across the whole catalog — without you adding a
second MCP server. There is currently no way to mount a pack endpoint without
them; if the extra schemas cost you more context than the routing is worth,
connect to the full gateway once rather than to several pack endpoints.

Or connect to the full Pipeworx gateway to get every pack's tools listed
directly, instead of just this one's:

```json
{
  "mcpServers": {
    "pipeworx": {
      "url": "https://gateway.pipeworx.io/mcp"
    }
  }
}
```

Both URLs reach the same gateway and the same 1476+ data sources. The
only difference is which pack's tools are listed **directly**; `ask_pipeworx`
reaches all of them from either one.

## Using with ask_pipeworx

Instead of calling tools directly, you can ask questions in plain English —
this works on the pack endpoint above as well as on the full gateway:

```
ask_pipeworx({ question: "your question about Opentreeoflife data" })
```

The gateway picks the right tool and fills the arguments automatically.

## More

- [Docs and guides](https://pipeworx.io/docs)
- [pipeworx.io](https://pipeworx.io)

## License

MIT